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auk 0.9.1
- ensure taxon_concept_id behaves correctly in auk_rollup() (issue
#94)
- update EBD example files to get latest format (e.g. add
taxon_concept_id)
auk 0.9.0
- update to align with the 2025 taxonomy update
auk 0.8.2
- handle changes to project names resulting from release of eBird
Projects
auk 0.8.1
- allow
ebird_species() to search for species codes in
addition to scientific and common names
- handle changes to EBD column names resulting from release of eBird
Projects (issue #91)
auk 0.8.0
- update for 2024 taxonomy
- added a helper function for processing bar chart data from eBird
process_barcharts()
auk 0.7.0
- update for 2023 eBird taxonomy
- no need to restart after setting AWK and EBD paths
- retain breeding codes in
auk_zerofill()
- changes to conform with deprecation of
.data$ in
tidyselect expressions
- changes to package-level documentation in roxygen2
- removed non-ASCII characters from datasets
auk 0.6.0
- update for 2022 eBird taxonomy
auk 0.5.2
- added an
extinct column to taxonomy
auk 0.5.1
- drop
data.table dependency, no longer needed with
readr speed improvements
- fix bug arising from ‘breeding bird atlas code’ being renamed to
‘breeding code’ (issue #58)
auk 0.5.0
- update to align with 2021 eBird taxonomy
auk 0.4.4
- updates to align with readr 2.0
auk 0.4.3
get_ebird_taxonomy() now fails gracefully when eBird
API is not accessible, fixing the CRAN check errors
https://cran.r-project.org/web/checks/check_results_auk.html
auk 0.4.2
- new
auk_county() filter
- new
auk_year() filter
- Drop taxonomy warnings since there was no taxonomy update this
year
auk 0.4.1
- Family common names now included in eBird taxonomy
auk_select() now requires certain columns to be
kept
- Better handling of file paths with
prefix argument in
auk_split()
- Fixed bug causing undescribed species to be dropped by
auk_rollup()
- Add a
ll_digits argument to
filter_repeat_visits() to round lat/lng prior to
identifying sites
- Change of default parameters to
filter_repeat_visits()
auk_bbox() now takes sf/raster spatial objects and
grabs bbox from them
auk 0.4.0
- Updated to 2019 eBird taxonomy
auk_observer() filter added
tidyr::complete_() deprecated, stopped using
auk 0.3.3
- Dates can now wrap in
auk_date(), e.g. use
date = c("*-12-01", "*-01-31") for records from December or
January
- Fixed bug preventing dropping of
age/sex column
- Allow for a wider variety of protocols in
auk_protocol()
- Addresing some deprecated functions from rlang
- Fixed bug causing
auk_set_awk_path() to fail
auk 0.3.2
- Work around for bug in system2() in some R versions:
https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17508
- Adding a filter for PROALAS checklists to
auk_protocol()
auk 0.3.1
rlang::UQ() and rlang::UQS() deprecated,
switching to !! and !!!
auk_unique() now keeps track of all sampling event and
observer IDs that comprise a group checklist
auk 0.3.0
- Updated to 2018 taxonomy; new function
get_ebird_taxonomy() to get taxonomy via the eBird API
- Better handling of taxonomy versions, many functions now take a
taxonomy_version argument and use the eBird API to get the
taxonomy
auk_getpath() renamed auk_get_awk_path(),
and added auk_set_awk_path()
- Added
auk_set_ebd_path() and
auk_get_ebd_path() to set and get the EBD_PATH
environment variable. Now users only need to set this once and just
refer to the file name, rather than specifying the full path every
time.
- Functions to prepare data for occupancy modeling:
filter_repeat_visits() and
format_unmarked_occu()
- New
auk_bcr() function to extract data from BCRs
- Added
bcr_codes data frame to look up BCR names and
codes
- “Area” protocol added to
auk_protocol() filter.
auk_extent() renamed auk_bbox();
auk_extent() deprecated and redirects to
auk_bbox()
auk_zerofill() now checks for complete checklists and
gives option to not rollup
auk_rollup() now gives the option of keeping higher
taxa via drop_higher argument
auk_clean() deprecated
- Fixed package load error when
EBD_PATH is invalid
- Fixed bug when reading files with a blank column using
readr
auk 0.2.2
- Updated to work with EDB version 1.9
- Modified tests to be more general to all sample data
ebird_species() now returns 6-letter species codes
- Fixed bug causing auk to fail on files downloaded via custom
download form
- Fixed bug with
normalizePath() use on Windows
- Fixed bug with
system2() on Windows
auk 0.2.1
- Patch release fixing a couple bugs
- Removed all non-ASCII characters from example files, closes issue
#14
- Fixed issue with state filtering not working, closes issue
$16
auk 0.2.0
- New function,
auk_split(), splits EBD up into multiple
files by species
- New object,
auk_sampling, and associated methods for
working with the sampling data only
- New function,
auk_select(), for selecting a subset of
columns
auk_date() now allows filtering date ranges across
years using wildcards, e.g. date = c("*-05-01", "*-06-30")
for observations from May and June of any year
- New function,
auk_state() for filtering by state
- Now using AWK arrays to speed up country and species filtering; ~20%
speed up when filtering on many species/countries
- Allow selection of a subset of columns when filtering
- Remove free text columns in
auk_clean() to decrease
file size
- Updated to work with Feb 2018 version of EBD
- Fixed broken dependency on
countrycode package
auk 0.1.0
- eBird taxonomy update to August 2017 version, users should download
the most recent EBD to ensure the taxonomy is in sync with the new
package
- Manually set AWK path with environment variable
AWK_PATH in .Renviron file
auk_distance, auk_breeding,
auk_protocol, and auk_project filters
added
- Users can now specify a subset of columns to return when calling
auk_filter using the keep and drop arguments
- Many changes suggested by rOpenSci package peer review process, see
https://github.com/ropensci/onboarding/issues/136 for details
- New vignette added to aid those wanting to contribute to package
development
auk 0.0.2
- Patch release converting ebird_taxonomy to ASCII to pass CRAN
checks
auk 0.0.1
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They may not be fully stable and should be used with caution. We make no claims about them.