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des_info(). This function has been
superseded by design(), and will be removed in a future
version.arcsin transformation handling in
multiple_comparisons() (#60).design() in preparation for moving
to a new backend later (#102). No user-facing changes.multiple_comparisons(). This required changing the
multiple_comparisons() output object to a list, but
printing to console and autoplot(multiple_comparisons()
(#125).satab() to reliably get the
same output (#133).export_design_to_excel() (#124).install_asreml() where it threw an error
with more than one new version (#122).resplot() to enable
easier expansion to different models in future. (#100)export_design_to_excel(). An
excel file can now be created from a design dataframe, instead of just a
graphical plot. (#74)multiple_comparisons(). The new option
int.type = 'tukey' will now create comparison intervals
using Tukey’s distribution rather than a t-distribution for a
regular confidence interval. This has been a point of confusion when
intervals don’t overlap but share letters. (#66)multiple_comparisons(). (#83)verbose option for the quiet
parameter in install_asreml() to give more detailed output
when required. (#81)onepage argument. (#73)multiple_comparisons() to enable easier expansion to
different models in future. (#92)multiple_comparisons() (#90)shapiro.test() within
resplot() with too many data points (#87)heat_map() didn’t work properly with
factor columns (#86)summary_graph() function was accidentally left
out of the CRAN submission.summary_graph() (#75) and
heat_map() (#19) functionsrow, column,
block and treatment columns to be provided in
the autoplot.design() function, to enable more general
plotting of designs. (#28)install_asreml() to check if there is a later
version before downloading.autoplot.design().multiple_comparisons() to prevent breaking. (#53)predictmeans(). (#50)ar1() component in
variogram(). (#49)multiple_comparisons() via classify.
(#48)present argument passed to
predict.asreml(). (#41)multiple_comparisons() now accepts power
transformations and automatically back-transforms. It gains a new
argument power to provide the transformation power applied
in the model to undo. This enables more general Box-Cox transformations.
(#36)multiple_comparisons() no longer produces an error when
the trans argument is supplied and offset is
not. It now produces a warning and sets offset to 0 when
not provided. (#37)options(biometryassist.check = FALSE) to your .Rprofile
file to disable. Partially fixes #6.autoplot.mct() (#35)multiple_comparisons() (#33)NAs have been produced. (#24 and #25)multiple_comparisons() no longer requires calls to
predict.asreml() to be passed into the function, as the
predicted values are now calculated internally. Additional arguments can
be passed to predict.asreml() via the ...
argument. (#27)order argument of
multiple_comparisons() has been deprecated in favour of a
new argument descending. This takes logical
(TRUE or FALSE) values only, so
default is no longer possible as it was producing incorrect
results. (#8)resplt() has been deprecated in favour of
resplot() and will be removed in a future version
(#20).logl_test(). (#17)multiple_comparisons() now. (#14)asreml() call
on resplot() if not explicitly provided. (#21)install_asreml() would not work on
macOS Monterey. (#16)mct.out() has been renamed to
multiple_comparisons()logl.test() has been renamed to
logl_test()des.info() has been renamed to
des_info()For changes prior to biometryassist 1.0.0 see the BiometryTraining package at https://biometryhub.github.io/BiometryTraining/news/index.html.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.