The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

News

cellGeometry 0.5.7

11/12/2025

• Change log argument in deconvolute() to logged_bulk. NB. this is a change of logic.

cellGeometry 0.5.6

07/10/2025

• Add residuals.deconv() to allow recalculation of full residuals matrix.

cellGeometry 0.5.5

10/09/2025

• Fix bug in mergeMarkers() if cellMarkers object has no cell grouping vector.

cellGeometry 0.5.4

09/09/2025

• Fix CRAN checks
• Switch from using cat() to message()

cellGeometry 0.5.3

26/08/2025

• Massive speed up (4-5x) in compensation optimisation

cellGeometry 0.5.2

30/07/2025

• Expanded to 3 methods for identifying outlier genes (var.e, Cook’s distance, Studentized residuals)
• Improved (nested) parallelisation of tune_deconv()
• Rewrite weights code (faster)

cellGeometry 0.5.0

14/07/2025

• Calculation of SE
• Detection and multipass removal of problematic genes with extreme residuals

cellGeometry 0.2.0

24/01/2025

• This is the initial build of cellGeometry

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.