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detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Version: 0.6.15
Depends: R (≥ 3.1)
Imports: arrayhelpers (≥ 1.1.0), autothresholdr (≥ 1.3.11), checkmate (≥ 1.9.3), doParallel, dplyr, filesstrings (≥ 3.2.4), foreach, ijtiff (≥ 2.2), iterators, magrittr (≥ 1.5), parallel, plyr, purrr, Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7), rlang (≥ 0.3.3), stringr (≥ 1.4), tools, withr (≥ 2.1)
LinkingTo: Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7)
Suggests: abind, covr, ggplot2, glue (≥ 1.3.0), graphics, gridExtra, knitr, lattice, MASS, matrixStats, mgcv, pacman, R.utils, rmarkdown, spelling, testthat (≥ 3.0), tidyr
Published: 2023-03-04
DOI: 10.32614/CRAN.package.detrendr
Author: Rory Nolan ORCID iD [aut, cre], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at gmail.com>
BugReports: https://github.com/rorynolan/detrendr/issues
License: BSD_3_clause + file LICENSE
URL: https://rorynolan.github.io/detrendr/, https://github.com/rorynolan/detrendr#readme
NeedsCompilation: yes
SystemRequirements: GNU make
Language: en-US
Citation: detrendr citation info
Materials: README NEWS
CRAN checks: detrendr results

Documentation:

Reference manual: detrendr.pdf
Vignettes: Batch mode
Linescan data
Detrending single images

Downloads:

Package source: detrendr_0.6.15.tar.gz
Windows binaries: r-devel: detrendr_0.6.15.zip, r-release: detrendr_0.6.15.zip, r-oldrel: detrendr_0.6.15.zip
macOS binaries: r-release (arm64): detrendr_0.6.15.tgz, r-oldrel (arm64): detrendr_0.6.15.tgz, r-release (x86_64): detrendr_0.6.15.tgz, r-oldrel (x86_64): detrendr_0.6.15.tgz
Old sources: detrendr archive

Reverse dependencies:

Reverse imports: nandb

Linking:

Please use the canonical form https://CRAN.R-project.org/package=detrendr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.