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Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'. Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA). The multilevel GSEA algorithm is derived from the 'fgsea' package. Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
| Version: | 0.0.8 |
| Depends: | R (≥ 3.5.0) |
| Imports: | methods, Rcpp (≥ 1.0.10), stats, yulab.utils (> 0.2.1) |
| LinkingTo: | Rcpp |
| Suggests: | AnnotationDbi, clusterProfiler, DOSE, gson, qvalue, quarto, testthat |
| Published: | 2025-12-22 |
| DOI: | 10.32614/CRAN.package.enrichit |
| Author: | Guangchuang Yu [aut, cre] |
| Maintainer: | Guangchuang Yu <guangchuangyu at gmail.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | enrichit results |
| Reference manual: | enrichit.html , enrichit.pdf |
| Vignettes: |
enrichit (source, R code) |
| Package source: | enrichit_0.0.8.tar.gz |
| Windows binaries: | r-devel: enrichit_0.0.8.zip, r-release: enrichit_0.0.8.zip, r-oldrel: enrichit_0.0.8.zip |
| macOS binaries: | r-release (arm64): enrichit_0.0.8.tgz, r-oldrel (arm64): enrichit_0.0.8.tgz, r-release (x86_64): enrichit_0.0.8.tgz, r-oldrel (x86_64): enrichit_0.0.8.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.