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fitode: Tools for Ordinary Differential Equations Model Fitting

Methods and functions for fitting ordinary differential equations (ODE) model in 'R'. Sensitivity equations are used to compute the gradients of ODE trajectories with respect to underlying parameters, which in turn allows for more stable fitting. Other fitting methods, such as MCMC (Markov chain Monte Carlo), are also available.

Version: 0.1.1
Depends: R (≥ 4.0), bbmle
Imports: deSolve, Deriv, MASS, numDeriv, mvtnorm, coda, methods
Suggests: knitr, ggplot2, testthat (≥ 3.0.0)
Published: 2022-10-29
DOI: 10.32614/CRAN.package.fitode
Author: Sang Woo Park ORCID iD [aut, cre], Ben Bolker ORCID iD [aut]
Maintainer: Sang Woo Park <swp2 at princeton.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
In views: DifferentialEquations
CRAN checks: fitode results

Documentation:

Reference manual: fitode.pdf
Vignettes: Getting started with fitode package

Downloads:

Package source: fitode_0.1.1.tar.gz
Windows binaries: r-devel: fitode_0.1.1.zip, r-release: fitode_0.1.1.zip, r-oldrel: fitode_0.1.1.zip
macOS binaries: r-release (arm64): fitode_0.1.1.tgz, r-oldrel (arm64): fitode_0.1.1.tgz, r-release (x86_64): fitode_0.1.1.tgz, r-oldrel (x86_64): fitode_0.1.1.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.