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forImage

The goal of forImage is to facilitate foraminiferal test measurement and biomass estimation.

The package is proposed as an alternative to manual and/or multi-software dependent methods for biometry and biomass estimation.

Installation

The package requires Python >= 3.5.

You can install forImage from github with:

remotes::install_github("ThaiseRF/forImage", build_vignettes = TRUE)
# Using `build_vignettes = TRUE` will slow down the install, but is necessary if 
# you want to read the vignette, which is recommended

Use install_measure() to install all Python modules dependencies (scipy, imutils, numpy, pandas, Pillow and OpenCV) at once in a virtual environment. This function is a wrapper of reticulate py_install() and requires a conda installation on Windows.

To install the Python modules via pip on Ubuntu:

sudo apt-get install python-pip
sudo pip install pip --upgrade
sudo pip install scipy

On Windows:

python -m pip install --upgrade pip
pip install scipy

On macOs:

python3 -m pip install --upgrade pip
pip3 install scipy

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.