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gen3sis: General Engine for Eco-Evolutionary Simulations

Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" <doi:10.1371/journal.pbio.3001340>.

Version: 1.5.11
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 0.12.16), Matrix, methods, utils, raster, gdistance, stringr, tools, grDevices
LinkingTo: Rcpp, BH
Suggests: knitr, markdown, testthat (≥ 2.1.0), rmarkdown, formatR
Published: 2023-11-22
DOI: 10.32614/CRAN.package.gen3sis
Author: ETH Zürich [cph], Oskar Hagen [aut, cre] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Benjamin Flück [aut] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Fabian Fopp [aut] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Juliano S. Cabral [aut] (Ecosystem Modeling, Center for Computational and Theoretical Biology, University of Würzburg, Würzburg, Germany), Florian Hartig [aut] (Theoretical Ecology, University of Regensburg, Regensburg, Germany), Mikael Pontarp [aut] (Department of Biology, Lund University, Lund, Sweden), Charles Novaes de Santana [ctb] (Landscape Ecology, WSL and ETH Zürich, Switzerland), Thiago F. Rangel [aut] (Department of Ecology, Universidade Federal de Goiás, Goiás, Brazil), Theo Gaboriau [ctb] (Depatment of Computational Biology, Lausanne University, Switzerland), Loïc Pellissier [aut, ths] (Landscape Ecology, WSL and ETH Zürich, Switzerland)
Maintainer: Oskar Hagen <oskar at hagen.bio>
BugReports: https://github.com/project-Gen3sis/R-package/issues
License: GPL-3
URL: https://github.com/project-Gen3sis/R-package
NeedsCompilation: yes
Citation: gen3sis citation info
Materials: README NEWS
CRAN checks: gen3sis results

Documentation:

Reference manual: gen3sis.pdf
Vignettes: 3. Creating configurations (gen3sis input)
2. Creating landscapes (gen3sis input)
4. Example designing landscapes
1. Introducing gen3sis

Downloads:

Package source: gen3sis_1.5.11.tar.gz
Windows binaries: r-devel: gen3sis_1.5.11.zip, r-release: gen3sis_1.5.11.zip, r-oldrel: gen3sis_1.5.11.zip
macOS binaries: r-release (arm64): gen3sis_1.5.11.tgz, r-oldrel (arm64): gen3sis_1.5.11.tgz, r-release (x86_64): gen3sis_1.5.11.tgz, r-oldrel (x86_64): gen3sis_1.5.11.tgz
Old sources: gen3sis archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=gen3sis to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.