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gp3bayes 0.1.1
Addressed CRAN feedback by replacing the non-executable fitting
example with a guarded \donttest{} example, enforcing a
two-core ceiling, requiring explicit report-output paths, using
temporary paths in vignettes, and removing direct modification of the
global environment.
Prepared the first CRAN submission candidate.
Added Zenodo DOI documentation and current release-status
wording.
Added explicit copyright-holder metadata for the initial CRAN
submission.
gp3bayes 0.1.0
- Created the independent
gp3bayes package scaffold.
- Defined the initial scope as contract-first Bayesian workflows for
hierarchical behavioural data.
- Restricted initial development to hierarchical Bernoulli-logit and
hierarchical lognormal-duration model families.
- Added package-level documentation and explicit interpretation
boundaries.
- Added the initial deterministic scope test using testthat edition
3.
- Added the MIT licence.
- Added standard GitHub Actions workflows for cross-platform R CMD
check and pkgdown deployment.
- Added canonical repository, issue-tracker, and pkgdown website
metadata.
- Added
create_model_contract() for the two approved
initial model families with neutral column mappings and explicit
methodological specifications.
- Added a concise
gp3bayes_model_contract print method
and deterministic validation tests.
- Added
audit_model_readiness() for backend-independent
assessment of outcome validity, declared columns, missingness, repeated
measurements, item and trial structure, predictors, interactions, time
terms, and requested participant-level random slopes.
- Added structured
gp3bayes_readiness_audit results with
explicit pass, warning, and failure statuses and a concise print
method.
- Added
build_model_formula() for deterministic,
backend-independent construction of approved fixed-effects, interaction,
participant, item, time, and optional participant-level random-slope
structures.
- Added
create_prior_specification() and
validate_prior_specification() for explicit binary-logit
and lognormal-duration prior records without creating executable backend
objects.
- Added
create_model_specification() to combine a model
contract, successful readiness audit, approved formula, and validated
priors into one inspectable backend-independent specification.
- Added concise print methods and deterministic validation tests for
formulas, priors, compatibility checks, and complete
specifications.
- Added
simulate_hierarchical_binary_data() for
deterministic hierarchical Bernoulli-logit simulation with participant
effects, optional crossed item effects, optional participant condition
slopes, controlled imbalance, and a stored true-parameter record.
- Added
prepare_hierarchical_binary_data() for explicit
binary-outcome mapping, condition coding, recorded predictor scaling,
missing-data decisions, readiness auditing, and fixed-effects matrix
construction.
- Added
specify_binary_model() to combine prepared data
with the approved binary contract, restricted hierarchical formula, and
validated backend-independent prior specification.
- Added
check_binary_prior_predictive() for deterministic
simulation of family-specific prior predictions and structured
plausibility checks without fitting a model or requiring a Bayesian
backend.
- Added concise print methods, generated documentation, and 89 focused
tests for the backend-independent binary workflow foundation.
- Added repository and installed-package citation metadata through
CITATION.cff and inst/CITATION.
- Refined the package description to match the currently implemented
backend-independent contract, readiness, simulation, preparation,
specification, and prior-predictive functionality.
- Added restricted binary model translation from approved package
specifications to
brms Bernoulli-logit formulas and
priors.
- Added optional full-MCMC fitting through the fixed
brms
and rstan sampling route without unrestricted formulas or
backend arguments.
- Added conservative fit metadata that records sampling settings while
explicitly withholding convergence and posterior-adequacy claims.
- Added conservative binary posterior diagnostics covering R-hat, bulk
and tail ESS, divergences, maximum-treedepth saturation, and chain-level
energy diagnostics.
- Added posterior summaries, binary posterior predictive checks,
prior-scale sensitivity, simulation-based recovery, diagnostic plots,
and structured Markdown model reports.
- Diagnostic, predictive, sensitivity, and recovery statuses never
create automatic convergence, adequacy, robustness, or validation
claims.
- Added the complete hierarchical lognormal duration workflow for
strictly positive finite uncensored outcomes.
- Added deterministic duration simulation, explicit unit conversion
and preparation, model specification, prior predictive checks,
restricted
brms translation, and full MCMC fitting through
rstan.
- Zero, negative, censored, truncated, shifted, survival, Gamma,
Weibull, and mixture outcomes remain outside the approved duration
contract.
- Added conservative duration posterior diagnostics, posterior
summaries with median-ratio interpretation, posterior predictive checks,
prior-scale sensitivity, simulation-based recovery, and structured
Markdown reports.
- Duration validation statuses remain separate from automatic
convergence, adequacy, robustness, causal, or substantive claims.
- Added integrated end-to-end binary and duration vignettes.
- Added dedicated articles for sampling diagnostics, prior sensitivity
and recovery, and optional backend installation.
- Added a repository-only audit covering exports, Rd aliases, pkgdown
reference topics, articles, built pages, and optional dependencies.
- Aligned DESCRIPTION, citation metadata, README, package
documentation, and the curated pkgdown reference and article indices
with the complete scope.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.