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linelistBayes: Bayesian Analysis of Epidemic Data Using Line List and Case Count Approaches

Provides tools for performing Bayesian inference on epidemiological data to estimate the time-varying reproductive number and other related metrics. These methods were published in Li and White (2021) <doi:10.1371/journal.pcbi.1009210>. This package supports analyses based on aggregated case count data and individual line list data, facilitating enhanced surveillance and intervention planning for infectious diseases like COVID-19.

Version: 1.0
Depends: R (≥ 2.10)
Imports: Rcpp (≥ 1.0.11), magrittr, lubridate, coda, dplyr
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-05-03
DOI: 10.32614/CRAN.package.linelistBayes
Author: Chad Milando [aut, cre], Tenglong Li [ctb], Laura White [ctb]
Maintainer: Chad Milando <cmilando at bu.edu>
License: GPL-3
NeedsCompilation: yes
Materials: README
CRAN checks: linelistBayes results

Documentation:

Reference manual: linelistBayes.pdf
Vignettes: linelistBayes: an introduction

Downloads:

Package source: linelistBayes_1.0.tar.gz
Windows binaries: r-devel: linelistBayes_1.0.zip, r-release: linelistBayes_1.0.zip, r-oldrel: linelistBayes_1.0.zip
macOS binaries: r-release (arm64): linelistBayes_1.0.tgz, r-oldrel (arm64): linelistBayes_1.0.tgz, r-release (x86_64): linelistBayes_1.0.tgz, r-oldrel (x86_64): linelistBayes_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=linelistBayes to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.