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mixIndependR 1.0.0 -2021.03.16

• updated “AlleleShare” and it is not compatible with odd sample size.
• update the version number and maintainer’s email address.

mixIndependR 0.4.4 -2021.01.07

• add citation information and publication link

mixIndependR 0.4.3 -2020.11.29

• Fix the bugs about exports of functions “read_vcf_gt” and “splitGenotype”.
• Update the NAMESPACE file to including the missing functions.

mixIndependR 0.4.2 -2020.11.26

Bug Fix

• Fix the bugs about dependency and support in “Description”.
• Optimize the size of plots in vignettes.

mixIndependR 0.4.1 -2020.11.24

Bug Fix

• Fix the bug in “GenotypeFreq” when expect = FALSE # Update Vignettes
• Attach dataset “mixexample” and update the example.

mixIndependR 0.4.0 -2020.11.24

Function Optimizing

• Optimize most functions and replace loops with parallel calculation. # New Functions
• Add function “read_vcf_gt” and “splitGenotype”, and make data importing compatible with excel, csv and vcf format for genotype.
• Remove the function “HWE.Fisher” for the moment # Vignette
• Update for the new version.

mixIndependR 0.3.0 -2020.10.05

New Functions

• add two functions “mixIndependK” and “mixIndependX”
• remove the function “Prop_Pvalue” # Vignette
• Vignettes are built

mixIndependR 0.2.3 -2020.09.24

Optimization

• optimize the function “Prop_Pvalue” by adding a logical variable “print”.

mixIndependR 0.2.2 -2020.09.20

Optimization

• simplify function “counta”

mixIndependR 0.2.1 -2020.03.11

Fix Bugs

• Fix the error that “AlleleShare_Table” cannot deal with samples with odd sample size when “replicate=F” # Add New Function
• Add a function named as “Prop_Pvalue” which can generate a bundle of p-values for one sample # Update Description Files
• The Edition

mixIndependR 0.2.0 -2020.02.01

Fix bugs

• Fix format conflict in “AlleleShare_Table”

• Solve “NA” problem in “Dis_SimuChisq” # Update Description Files

• Add “References” to “DistAlleleShare”, “ExpProAlleleShare”, “GenotypeFreq”, “HWE_Fisher”, and “RxpHetero”

• Correct “Usage” to include more information of input.

• Add “examples” to all R functions. # New .R files

• “RxpHetero” to calculate average heterozygosity of observed or under Hardy-Weinberg Equilibrium

• “FreqAlleleShare” to build observed distribution for No. of shared alleles

• “FreqHetero” build observed distribution for No. of heterozygous loci

• “RealProAlleleShare” to calculate real density of shared alleles on each loci.

• “ComposPare_K” to generate a dataframe including observed and expected data of No. of heterozygous loci for easily plotting.

• “ComposPare_X” to generate a dataframe including observed and expected data of No. of sharing alleles for easily plotting. # Update Old .R files

• Add column names to “AlleleShare_Table”

• Added a NEWS.md file to track changes to the package.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.