The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

netgsa

Network-based Gene Set Analysis

This package carries out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.

Package Installation

You can install it directly from GitHub through devtools:

library(devtools)
devtools::install_github("mikehellstern/netgsa", build_vignettes=T)

Updates

The most recent implementation has optimized the NetGSA computation in the following aspects:

References

Ma, Jing, Shojaie, Ali and Michailidis, George. (2016) Network-based pathway enrichment analysis with incomplete network information. Bioinformatics https://doi.org/10.1093/bioinformatics/btw410

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.