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netmhc2pan: Interface to 'NetMHCIIpan'

The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at <https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/> or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.

Version: 1.3.2
Imports: devtools, dplyr, rappdirs, readr, seqinr, stringr, testit, tibble
Suggests: knitr, rmarkdown, testthat, spelling
Published: 2023-11-08
DOI: 10.32614/CRAN.package.netmhc2pan
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Lue Ping Zhao [ctb], Byungkuk Min [ctb]
Maintainer: Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl>
BugReports: https://github.com/richelbilderbeek/netmhc2pan/issues
License: GPL-3
URL: https://github.com/richelbilderbeek/netmhc2pan/
NeedsCompilation: no
SystemRequirements: NetMHC2pan (https://services.healthtech.dtu.dk/service.php?NetMHCIIpan-3.2)
Language: en-US
CRAN checks: netmhc2pan results

Documentation:

Reference manual: netmhc2pan.pdf
Vignettes: Demo

Downloads:

Package source: netmhc2pan_1.3.2.tar.gz
Windows binaries: r-devel: netmhc2pan_1.3.2.zip, r-release: netmhc2pan_1.3.2.zip, r-oldrel: netmhc2pan_1.3.2.zip
macOS binaries: r-release (arm64): netmhc2pan_1.3.2.tgz, r-oldrel (arm64): netmhc2pan_1.3.2.tgz, r-release (x86_64): netmhc2pan_1.3.2.tgz, r-oldrel (x86_64): netmhc2pan_1.3.2.tgz
Old sources: netmhc2pan archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=netmhc2pan to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.