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omicwas

Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments

Installation in R

In order to install the most recent version:

install.packages("devtools")
devtools::install_github("fumi-github/omicwas", build_vignettes = TRUE)

If you encounter dependency error for sva package, install it from Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sva")

To install from CRAN archive (possibly a version older than github):

install.packages("omicwas")

To uninstall package:

remove.packages("omicwas")

Usage

library(omicwas)
vignette("intro", package = "omicwas")

Information

Preprint available from bioRxiv

CSHL (14 Nov 2019) poster

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.