The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

oncomsm: Bayesian Multi-State Models for Early Oncology

Implements methods to fit a parametric Bayesian multi-state model to tumor response data. The model can be used to sample from the predictive distribution to impute missing data and calculate probability of success for custom decision criteria in early clinical trials during an ongoing trial. The inference is implemented using 'stan'.

Version: 0.1.4
Depends: R (≥ 3.6)
Imports: methods, Rcpp, RcppNumerical (≥ 0.4), rstan (≥ 2.18), rlang (≥ 0.4), magrittr, tibble, dplyr, tidyr, purrr, furrr, stringr, ggplot2, checkmate, rstantools
LinkingTo: BH (≥ 1.66.0), Rcpp, RcppEigen (≥ 0.3), RcppNumerical (≥ 0.4), rstan (≥ 2.18), StanHeaders (≥ 2.18), RcppParallel
Suggests: rmarkdown, knitr, testthat (≥ 3.0.0), patchwork, bhmbasket, vdiffr, DiagrammeR, future, doFuture, doRNG, rjags
Published: 2023-04-17
DOI: 10.32614/CRAN.package.oncomsm
Author: Kevin Kunzmann ORCID iD [aut, cre], Karthik Ananthakrishnan [ctb], Boehringer Ingelheim Ltd. [cph, fnd]
Maintainer: Kevin Kunzmann <kevin.kunzmann at boehringer-ingelheim.com>
BugReports: https://github.com/Boehringer-Ingelheim/oncomsm/issues
License: Apache License 2.0
URL: https://boehringer-ingelheim.github.io/oncomsm/, https://github.com/Boehringer-Ingelheim/oncomsm
NeedsCompilation: yes
SystemRequirements: GNU make
Language: en-US
Materials: NEWS
CRAN checks: oncomsm results

Documentation:

Reference manual: oncomsm.pdf
Vignettes: avoiding-bias
oncomsm
prior-choice

Downloads:

Package source: oncomsm_0.1.4.tar.gz
Windows binaries: r-devel: oncomsm_0.1.4.zip, r-release: oncomsm_0.1.4.zip, r-oldrel: oncomsm_0.1.4.zip
macOS binaries: r-release (arm64): oncomsm_0.1.4.tgz, r-oldrel (arm64): oncomsm_0.1.4.tgz, r-release (x86_64): oncomsm_0.1.4.tgz, r-oldrel (x86_64): oncomsm_0.1.4.tgz
Old sources: oncomsm archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=oncomsm to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.