The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

pepr 0.5.0 - 2023-11-16

Fixed

• result class of appended attributes; it’s no longer wrapped in a list
• various other fixes and improvements

Changed

• error message when nonexistent attribute is derived

Added

• possibility to configure the sample and subsample table index attributes in the Project object constructor
• possibility to initialize Project with no configuration file
• ability to initialize a project from URL
• auto initialization file detection: CSV (sample table) or YAML (project config)
• duplicated sample auto-merging

pepr 0.4.0 - 2020-10-14

Changed

• added multiple subsample_table support

Fixed

• issues with config file determination

pepr 0.3.2 - 2020-06-03

Changed

• package description

pepr 0.3.1 - 2020-05-27

Fixed

• issues with auto path expansion in objects of Config class on Windows
• issues with path absoluteness determination on Windows

pepr 0.3.0 - 2020-05-26

This version introduced backwards-incompatible changes.

Added

• auto path expansion in Config class
• attribute duplication functionality
• config importing functionality
• attribute removal functionality
• possibility to define multi-attribute rules in attribute implication

Changed

• project configuration file to follow PEP2.0.0 specification. Browse the specification for changes related to config format

pepr 0.2.2 - 2020-01-09

Changed

• downgrade exception from error to warining when missing envieonment variable is found

Fixed

• issues related to subsample table functionality; #33

pepr 0.2.1 - 2019-06-21

Changed

• checkSection method can be used with a mixture of section names and indices.
• improved interaction between pepr and BiocProject

pepr 0.2 - 2019-04-17

Changed

• keys in the config file: sample_annotation to sample_table, sample_subannotation to subsample_table. Backwards compatibility is preserved.

pepr 0.1 - 2019-02-01

Added

• add activateSubproject method
• add fetchSamples function
• add checkSection method on Config object

Changed

• if the subproject argument of the Project() function is not present in the config, the original project is returned
• paths in the bioconductor section of the config are made absolute and environment variables are read
• no sample annotation is allowed if any subprojects are defined in the config
• fixed the problem with paths expansions in sample subannotations case

pepr 0.0.4 - 2018-11-14

Changed

• change the Project object construction, the subproject can be activated at construction time
• change implied/derived_columns to implied/derived_attributes. Backwards compatible
• change constants to constantAttributes. Backwards compatible
• fix expandPath() function, add error when environment variable not found

pepr 0.0.3 - 2018-09-12

Added

• add derived_columns functionality
• add implied_columns functionality
• add subannotation functionality

pepr 0.0.2 - 2018-09-06

Added

• first release, includes basic PEP reading functions

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.