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To cite phylogram in publications use:

Wilkinson SP, Davy SK (2018). phylogram: an R package for phylogenetic analysis with nested lists, volume 3. doi:10.21105/joss.00790, http://joss.theoj.org/papers/10.21105/joss.00790.

Corresponding BibTeX entry: 

  @Manual{,
    title = {{phylogram}: an R package for phylogenetic analysis with
      nested lists},
    author = {Shaun P. Wilkinson and Simon K. Davy},
    url = {http://joss.theoj.org/papers/10.21105/joss.00790},
    journal = {Journal of Open Source Software},
    volume = {3},
    pages = {790},
    year = {2018},
    doi = {10.21105/joss.00790},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.