The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

CRAN_Status_Badge codecov # protViz - Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Documentation

The package ships with two pdf vignettes.

browseVignettes('protViz')

vignette('protViz')
vignette('PTM_MarkerFinder')

Installation

CRAN

install.packages('protViz')

from github

install the latest development version

install.packages('devtools')
library(devtools)
install_git('https://github.com/cpanse/protViz', build_vignettes = FALSE, quiet = FALSE)
library(protViz)

or

BiocManager::install('cpanse/protViz')

R CMD build hints

Rcpp::compileAttributes()

tools::package_native_routine_registration_skeleton(".", character_only = FALSE)


RcppExport SEXP _rcpp_module_boot_MyModule();

static const R_CallMethodDef CallEntries[] = {
    {"_rcpp_module_boot_MyModule", (DL_FUNC) &_rcpp_module_boot_MyModule, 0},
    {NULL, NULL, 0}
};

RcppExport void R_init_minModuleEx(DllInfo *dll) {
    R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
    R_useDynamicSymbols(dll, FALSE);
}

Docker

docker pull cpanse/protviz \
&& docker run -d -p 8792:8787 cpanse/protviz

connect to http://yourdockerhost:8791 using a web browser

Documentation

The package ships with a package vignette (browseVignettes(‘protViz’) and a reference manual (just type ?protViz on the R shell).

Both documents are also available on the package’s CRAN page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.