The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.

Version: 0.3.1
Depends: R (≥ 3.1.0)
Imports: AhoCorasickTrie, docopt, Matrix, methods, purrr, readr, rlang, seqinr, stringr, dplyr
Suggests: knitr, rmarkdown
Published: 2021-12-07
DOI: 10.32614/CRAN.package.prozor
Author: Witold Wolski ORCID iD [aut, cre]
Maintainer: Witold Wolski <wewolski at gmail.com>
BugReports: https://github.com/protviz/prozor/issues
License: GPL-3
URL: https://github.com/protviz/prozor
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: prozor results

Documentation:

Reference manual: prozor.pdf
Vignettes: Creating Target Decoy Databases
Peptide Annotation and Protein Inference
Target Decoy FDR
Computing Dynamic SWATH Windows

Downloads:

Package source: prozor_0.3.1.tar.gz
Windows binaries: r-devel: prozor_0.3.1.zip, r-release: prozor_0.3.1.zip, r-oldrel: prozor_0.3.1.zip
macOS binaries: r-release (arm64): prozor_0.3.1.tgz, r-oldrel (arm64): prozor_0.3.1.tgz, r-release (x86_64): prozor_0.3.1.tgz, r-oldrel (x86_64): prozor_0.3.1.tgz
Old sources: prozor archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=prozor to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.