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restez 2.1.4
BUG FIXES
- Fix bug in test due to update to duckdb (#55)
restez 2.1.3 (2022-11-09)
BUG FIXES
- Fix error in processing GenBank release notes that arose in GenBank
release 252 (#47)
restez 2.1.2 (2022-09-05)
BUG FIXES
- Fix spelling errors (4c0f9e48fb3e4d3351a4282d121b26f24d4241f1)
- Fix broken links (fddb4c2508975fe5bf5588da6aae5aca15f82a61)
- Other minor fixes for submission to CRAN
(43795b48d6fa4ef4c7485dc0f1675d6a2e4fa574,
325b74ff3193bb94e9062bb6114a30b709324ca8)
restez 2.1.1 (2022-09-05)
BUG FIXES
- Fix incorrect warning about
max_tries (#45)
restez 2.1.0 (2022-08-31)
BUG FIXES
- Fixed bug where
restez_status() did not show correct
file size (#32)
- Fixed frequent appearance of “Database is garbage-collected” warning
(#33)
- Skip scanning of gzipped file if zgrep is not detected
(3de4f95985c9e857eba276c323625c5c32461155)
DOCUMENTATION
- Add “Accession filter” to “Tips and Tricks”
(1e30498f91b7efd765fb24243df686e10ee16977)
- Use markdown syntax for roxygen2
(ded1466af50562b88fa1bd349fdadbc1081495d3)
NEW FEATURES
- Change use of
restez_connect() and
restez_disconnect(): they are no longer user-facing, and
instead get run internally for each instance of connecting to the local
database. Also, connection to DB is made in read-only mode, which should
allow for multiple simultaneous processes to access the DB (#33,
#35)
- Add
ncbi_acc_get() to enable easier querying of GenBank
accession numbers (#37, #43)
- Add
max_tries argument to db_download() to
automatically re-try download in the event of a drop in internet
connectivity (#36, #42)
- Add
dnabin argument to gb_sequence_get()
to return sequences in ape DNAbin format (#38, #44)
restez 2.0.0 (2022-07-07)
BUG FIXES
- Migrate to duckdb (#18, #26)
DOCUMENTATION
- Update to correct github repo (#28)
NEW FEATURES
- Add option to connect to database in read-only mode
(91b85f6dd24153c16be1cf74a712e5349e31c679)
OTHER
- Switch CI from travis to github actions
(9cc52e888accf489310b604b2636ffbfd0acecd7)
restez 1.1.0 (2022-06-03)
BUG FIXES
- Fix bug where single extremely long sequence caused db_create() to
die (#14)
NEW FEATURES
- Add ability to filter database by accession number upon creation
(#25)
OTHER
restez 1.0.1 (2019-01-07)
BUG FIXES
- Check internet connection in mainland China
restez 1.0.0 (2018-11-27)
OTHER
- Post-review version of
restez released.
- Download and query parts of GenBank from within R
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.