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roots: Reconstructing Ordered Ontogenic Trajectories

A set of tools to reconstruct ordered ontogenic trajectories from single cell RNAseq data.

Version: 1.0
Depends: R (≥ 3.0)
Imports: animation (≥ 2.4), rARPACK (≥ 0.11-0), igraph (≥ 1.0.0)
Suggests: knitr, rmarkdown
Published: 2017-07-11
DOI: 10.32614/CRAN.package.roots
Author: Wajid Jawaid [aut, cre]
Maintainer: Wajid Jawaid <wj241 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: roots results

Documentation:

Reference manual: roots.pdf
Vignettes: Infer biologically plausible journeys through single cell data

Downloads:

Package source: roots_1.0.tar.gz
Windows binaries: r-devel: roots_1.0.zip, r-release: roots_1.0.zip, r-oldrel: roots_1.0.zip
macOS binaries: r-release (arm64): roots_1.0.tgz, r-oldrel (arm64): roots_1.0.tgz, r-release (x86_64): roots_1.0.tgz, r-oldrel (x86_64): roots_1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=roots to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.