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scMetaTraj: Metabolic State Space and Trajectory Analysis for Single-Cell Data

Provides a framework for modeling cellular metabolic states and continuous metabolic trajectories from single-cell RNA-seq data using pathway-level scoring. Enables lineage-restricted metabolic analysis, metabolic 'pseudotime' inference, module-level trend analysis, and visualization of metabolic state transitions.

Version: 0.1.1
Depends: R (≥ 4.1.0)
Imports: stats, igraph, ggplot2, uwot, RANN, Seurat, dplyr, tidyr
Published: 2026-01-27
DOI: 10.32614/CRAN.package.scMetaTraj
Author: Jinwei Dai ORCID iD [aut, cre]
Maintainer: Jinwei Dai <greg0453 at 163.com>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: scMetaTraj results

Documentation:

Reference manual: scMetaTraj.html , scMetaTraj.pdf

Downloads:

Package source: scMetaTraj_0.1.1.tar.gz
Windows binaries: r-devel: scMetaTraj_0.1.1.zip, r-release: not available, r-oldrel: scMetaTraj_0.1.1.zip
macOS binaries: r-release (arm64): scMetaTraj_0.1.1.tgz, r-oldrel (arm64): scMetaTraj_0.1.1.tgz, r-release (x86_64): scMetaTraj_0.1.1.tgz, r-oldrel (x86_64): scMetaTraj_0.1.1.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.