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scrm: Simulating the Evolution of Biological Sequences

A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) <doi:10.1093/bioinformatics/btu861>. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

Version: 1.7.5
Depends: R (≥ 3.1.0)
Imports: Rcpp (≥ 0.11.2)
LinkingTo: Rcpp
Suggests: ape, knitr, rmarkdown, testthat (≥ 0.9.0)
Published: 2024-01-08
DOI: 10.32614/CRAN.package.scrm
Author: Paul Staab [aut, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cre, cph, ths], Gerton Lunter [aut, cph, ths]
Maintainer: Dirk Metzler <metzler at bio.lmu.de>
BugReports: https://github.com/scrm/scrm-r/issues
License: GPL (≥ 3)
URL: https://github.com/scrm/scrm-r
NeedsCompilation: yes
Citation: scrm citation info
Materials: README NEWS
CRAN checks: scrm results

Documentation:

Reference manual: scrm.pdf
Vignettes: scrm-Arguments
scrm-TreesForApe

Downloads:

Package source: scrm_1.7.5.tar.gz
Windows binaries: r-devel: scrm_1.7.5.zip, r-release: scrm_1.7.5.zip, r-oldrel: scrm_1.7.5.zip
macOS binaries: r-release (arm64): scrm_1.7.5.tgz, r-oldrel (arm64): scrm_1.7.5.tgz, r-release (x86_64): scrm_1.7.5.tgz, r-oldrel (x86_64): scrm_1.7.5.tgz
Old sources: scrm archive

Reverse dependencies:

Reverse imports: coala, poolABC, poolHelper
Reverse suggests: jackalope

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scrm to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.