The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

simode: Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching

Implements statistical inference for systems of ordinary differential equations, that uses the integral-matching criterion and takes advantage of the separability of parameters, in order to obtain initial parameter estimates for nonlinear least squares optimization. Dattner & Yaari (2018) <doi:10.48550/arXiv.1807.04202>. Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>. Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.

Version: 1.2.2
Depends: R (≥ 3.4.0)
Imports: deSolve, pracma, quadprog, glmnet, ncvreg
Suggests: parallel, knitr, testthat (≥ 3.0.0), rmarkdown
Published: 2024-02-16
DOI: 10.32614/CRAN.package.simode
Author: Itai Dattner [aut], Rami Yaari [aut, cre]
Maintainer: Rami Yaari <ramiyaari at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: simode results

Documentation:

Reference manual: simode.pdf
Vignettes: simode

Downloads:

Package source: simode_1.2.2.tar.gz
Windows binaries: r-devel: simode_1.2.2.zip, r-release: simode_1.2.2.zip, r-oldrel: simode_1.2.2.zip
macOS binaries: r-release (arm64): simode_1.2.2.tgz, r-oldrel (arm64): simode_1.2.2.tgz, r-release (x86_64): simode_1.2.2.tgz, r-oldrel (x86_64): simode_1.2.2.tgz
Old sources: simode archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=simode to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.