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Slant.R

Overview

slanter contains a set of functions for reordering data, and generating hierarchical clustering for ordered data, for improved visualization.

See the published R package, the rdocumentation, or the latest github version documentation for details. Specifically, the meristems vignette explains why and how to use this package.

Installation

To install it, use:

install.packages('slanter')

Usage

In general, if your data is a similarity matrix (each entry is a non-negative value that indicates how similar a pair of elements is to each other, higher is better), then use slanter::sheatmap as a drop-in replacement for pheatmap::pheatmap, and enjoy.

The lower level function slanter::slanted_orders will compute the visualization order and slanter::oclust will compute hierarchical clustering that is consistent with this order. See the published R package, the rdocumentation, or the latest github version documentation’s reference section for the list and description of the available functions.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.