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treediff is an R package designed to
perform Hi-C data differential analysis based on pixel-level
differential analysis and a post hoc inference strategy to quantify
signal in clusters of pixels. Clusters of pixels are obtained through a
connectivity-constrained two-dimensional hierarchical clustering.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.