# FDR Power

## Documentation for package ‘pwrFDR’ version 2.8.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

%,% | The paste operator
%over% | Division operator with divide by zero clobbering
arg.vals | Extracts the full argument list and call attribute.
cc.ROC | Computes the optimal number of controls per case in hypothesis tests involving the ROC. Included here with the intent that it can be used in conjunction with 'pwrFDR' to allow power/sample size calculation for multiple tests of ROC curve based hypothesis. See details.
cCDF.Rom | Computes the complimentary CDF for the significant call proportion, R_m/m.
cCDF.ToM | Computes the complimentary CDF for the true positive proportion, T_m/M_m.
cCDF.VoR | Computes the complimentary CDF for the false discovery proportion, V_m/R_m.
CDF.Pval | CDF of pooled (H0 and HA) population p-values
CDF.Pval.ar.eq.u | Calculates the fixed point for the Romano procedure.
CDF.Pval.HA | CDF of p-values for test statistics distribted under HA.
CDF.Pval.ua.eq.u | Function which solves the implicit equation u = G( u alpha)
controlFDP | Helper function for the BHCLT FDP control method
criterion | BH-FDR and Romano Criterion
detail | The detail extraction function for simulated power objects
dists | The Distribution family object
es.ROC | Computes the equivalent Z-test effect size in hypothesis tests involving the ROC. Included here with the intent that it can be used in conjunction with 'pwrFDR' to allow power/sample size calculation for multiple tests of ROC curve based hypothesis. See details.
gentempfilenm | Generate a tempfile name
if.0.rm | A helper function- remove if zero.
if.na.x | A helper function - substitute 'NA's with a specified 'x'.
if.y.z | A helper function - substitute 'y"s with a specified 'z'.
logit | Computes the logit transform
logitInv | Computes the inverse logit transform
nna | A helper function- turns a missing column into 'NA's inside of a with statement
paste | The paste operator
pwrFDR | Ensemble power or sample size under selected control of the FDP
pwrFDR.grid | Evaluate 'pwrFDR' on a grid.
sd.rtm.Rom | Extractor function for asymptotic sd[R_m/m] under selected FDP control method
sd.rtm.ToM | Extractor function for asymptotic sd[T_m/M_m] under selected FDP control method
sd.rtm.VoR | Extractor function for asymptotic sd[V_m/R_m] under selected FDP control method
view.presentation | Call this function (without arguments) to open a presentation which describes the theory behind the package and presents a simulation study.