# A Code Generator for ODE-Based Models

## Documentation for package ‘rodeo’ version 0.7.8

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

rodeo-package | Package to Facilitate ODE-Based Modeling
compile | Generate Executable Code
dynamics | Numerical Integration
exportDF | Export a Data Frame as HTML/TEX Code
finalize | Clean-up a 'rodeo' Object
forcingFunctions | Generation of Forcing Functions in Fortran
funs | Declaration of Functions
generate | Code Generator
getPars | Query Values of Parameters
getVars | Query Values of State Variables
initialize | Initialize a 'rodeo' Object
initStepper | Initialize Internal ODE Solver
libFunc | Return name of library function
libName | Return library name
new | Initialize a 'rodeo' Object
pars | Declaration of Parameters
plotStoichiometry | Plot Qualitative Stoichiometry Matrix
pros | Declaration of Processes
rodeo | 'rodeo' Class
rodeo-class | 'rodeo' Class
setPars | Assign Values to Parameters
setVars | Assign Values to State Variables
step | Numerical Integration Over a Single Time Step
stoi | Specification of Stoichiometry
stoiCheck | Validation of a Stoichiometry Matrix
stoichiometry | Return the Stoichiometry Matrix
stoiCreate | Stoichiometry Matrix from Reaction Equations
vars | Declaration of Variables