Estimate Incidence and Prevalence using the OMOP Common Data Model

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Documentation for package ‘IncidencePrevalence’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

asIncidenceResult	A tidy implementation of the summarised_result object for incidence results.
asPrevalenceResult	A tidy implementation of the summarised_result object for prevalence results.
availableIncidenceGrouping	Variables that can be used for faceting and colouring incidence plots
availablePrevalenceGrouping	Variables that can be used for faceting and colouring prevalence plots
benchmarkIncidencePrevalence	Run benchmark of incidence and prevalence analyses
estimateIncidence	Collect population incidence estimates
estimatePeriodPrevalence	Estimate period prevalence
estimatePointPrevalence	Estimate point prevalence
generateDenominatorCohortSet	Identify a set of denominator populations
generateTargetDenominatorCohortSet	Identify a set of denominator populations using a target cohort
IncidencePrevalenceBenchmarkResults	Benchmarking results
mockIncidencePrevalence	Generate example subset of the OMOP CDM for estimating incidence and prevalence
optionsTableIncidence	Additional arguments for the functions tableIncidence.
optionsTablePrevalence	Additional arguments for the functions tablePrevalence.
plotIncidence	Plot incidence results
plotIncidencePopulation	Bar plot of denominator counts, outcome counts, and person-time from incidence results
plotPrevalence	Plot prevalence results
plotPrevalencePopulation	Bar plot of denominator and outcome counts from prevalence results
tableIncidence	Table of incidence results
tableIncidenceAttrition	Table of incidence attrition results
tablePrevalence	Table of prevalence results
tablePrevalenceAttrition	Table of prevalence attrition results