# Geographical Risk Analysis Based on Habitat Connectivity

## Documentation for package ‘geohabnet’ version 2.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.grast_ro | GlobalRast class
.indices | Internal function to extract risk indices from a list of crop rasters.
.model_ob | GeoModel class
.rast_ro | GeoRaster class
betweeness | Calculation on network metrics a.k.a centralities.
closeness | Calculation on network metrics a.k.a centralities.
connectivity | Calculate and plot maps
cropharvest_rast | Get raster object for crop
crops_rast | Get sum of rasters for individual crops
degree | Calculation on network metrics a.k.a centralities.
dist_methods | Distance methods supported
ev | Calculation on network metrics a.k.a centralities.
GeoModel-class | GeoModel class
GeoNetwork-class | GeoNetwork
GeoRasters-class | GeoRaster class
geoscale_param | Get geographical scales from the parameters
get_parameters | Get Parameters
get_rasters | Get rasters object from parameters
GlobalRast-class | GlobalRast class
global_scales | Global geographical extent
Gmap-class | Gmap class
gplot | Plot a Raster* object
hci_diff | Calculate difference map
hci_mean | Calculate mean of raster objects
hci_variance | Calculate variance of CCRI
host_density<- | Set the host density.
host_density<--method | GeoNetwork
inv_powerlaw | Dispersal kernels
load_parameters | Load Parameters from YAML File
mapspam | Supported sources for Mapspam
monfreda | Supported sources for monfreda
msean | Sensitivity analysis across maps of habitat connectivity
msean_onrast | Run sensitivity analysis
neg_expo | Dispersal kernels
nn_sum | Calculation on network metrics a.k.a centralities.
node_strength | Calculation on network metrics a.k.a centralities.
pagerank | Calculation on network metrics a.k.a centralities.
reset_params | Reset parameters.yaml
reso | Get resolution value
RiskMap-class | RiskMap class
risk_indices | Get risk indices
sa_onrasters | Run sensitivity analysis
sean | Sensitivity analysis across maps of habitat connectivity
search_crop | Search for crop
sensitivity_analysis | Sensitivity analysis for habitat connectivity
setmaps | Gmap class
setmaps-method | Sets the map slots in the Gmap object.
set_global_scales | Set global geographical extent
set_parameters | Set Parameters
sp_rast | Raster for mapspam crop.
supported_metrics | Returns metrics currently supported in the analysis.
supported_sources | Get supported sources of crops
tiff_torast | Get raster object from tif file