# Sparse Family and Selection Index

## Documentation for package ‘SFSI’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

coef.LASSO | LASSO methods
coef.SGP | SGP methods
cov2cor2 | Conversion of a covariance matrix to a distance/correlation matrix
cov2dist | Conversion of a covariance matrix to a distance/correlation matrix
fitBLUP | Fitting a Linear Mixed model to calculate BLUP
genCOV_xy | Wheat dataset
genCOV_yy | Wheat dataset
getGenCov | Pairwise Genetic Covariance
get_folds | Data partition into folds of the same size
LARS | Least Angle Regression to solve LASSO-type problems
M | Wheat dataset
multitrait.plot | Accuracy vs penalization from multi-trait SGP
net | Graphical Network
path.plot | Coefficients path plot
plot.net | Plotting a network
plot.SGP | Accuracy vs penalization plot
predict.LASSO | LASSO methods
predict.SGP | SGP methods
Prune | R-squared pruning
readBinary | Save/read binary files
read_SGP | Read and combine SGP outputs
read_summary | Read and combine SGP outputs
resCOV_yy | Wheat dataset
saveBinary | Save/read binary files
SGP | Sparse Genomic Prediction
SGP.CV | Sparse Genomic Prediction
solveEN | Coordinate Descent algorithm to solve Elastic-Net-type problems
summary.SGP | SGP methods
VI_E1 | Wheat dataset
wheatHTP | Wheat dataset
X_E1 | Wheat dataset
Y | Wheat dataset