Unified Differential Expression, Variability and Skewness Analysis for RNA-Seq Data

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Documentation for package ‘SIEVEseq’ version 0.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

clr.SN.fit	Fit the skew-normal distribution to CLR-transformed RNA-Seq data
clrCounts1	Simulated CLR-transformed count table
clrCounts2	Simulated DV genes CLR-transformed count table
clrCounts3	Simulated DE genes CLR-transformed count table
clrDE	Differential Expression (DE) Test of CLR-transformed RNA-Seq Data
clrDV	Differential variability (DV) test of CLR-transformed RNA-Seq data
clrSeq	Fit the skew-normal model to CLR-transformed RNA-Seq data for 2 groups
clrSIEVE	Simultaneous Differential Expression, Variability and Skewness Analysis Using RNA-Seq Data
SN.plot	Distribution of CLR-transformed counts
violin.plot.SIEVE	Violin plots