alphafold_model         The predicted structure for a UniProt accession
alphafold_parse_model   Turn an AlphaFold prediction response into a
                        table
civic_gene              Curated clinical evidence counts for a gene
civic_parse_gene        Turn a CIViC gene response into a table
clingen_alleles         Resolve HGVS to canonical allele ids
clingen_gene_validity   The ClinGen gene-disease validity table
clingen_parse_allele    Turn one Allele Registry element into a table
                        row
clingen_parse_batch     Turn an Allele Registry batch response into a
                        table
clingen_parse_validity
                        Parse the ClinGen gene-validity CSV
clingen_validity_for    Filter a parsed validity table to one or more
                        genes
clinvar_category        Bucket a ClinVar significance string into a
                        coarse category
clinvar_classification
                        Look up the ClinVar classification for a
                        variant
clinvar_conditions      Collapse a ClinVar trait set into one condition
                        string
clinvar_parse_record    Turn a ClinVar esummary record into a table
dgidb_gene              Drug-gene interaction count for one gene
dgidb_genes             Drug-gene interaction counts for many genes
dgidb_parse_genes       Turn a DGIdb genes response into a table
diseases_channel        Genes DISEASES associates with a disease, from
                        one channel
diseases_gene_associations
                        Genes DISEASES associates with a disease,
                        across both channels
diseases_merge_channels
                        Combine DISEASES channels, keeping the
                        strongest score per gene
diseases_parse_channel
                        Turn one DISEASES channel response into a table
ensembl_gene_model      The exon model for a gene
ensembl_parse_consequences
                        Turn Ensembl transcript consequences into a
                        table
ensembl_parse_gene_model
                        Turn an Ensembl gene lookup into a gene model
ensembl_parse_vep       Turn an Ensembl VEP record into a result
ensembl_vep_id          Run VEP for a variant id
europepmc_count         How many publications Europe PMC has for a
                        query
europepmc_parse_count   Read the hit count off a Europe PMC response
europepmc_parse_results
                        Turn Europe PMC search results into a table
europepmc_query         Build a Europe PMC query from terms
europepmc_search        Search Europe PMC
gnomad_constraint       Gene constraint for one gene
gnomad_constraints      Gene constraint for many genes
gnomad_frequencies      Population allele frequency for many variants
gnomad_frequency        Population allele frequency for a variant
gnomad_frequency_by_id
                        Population allele frequency for a variant, by
                        id
gnomad_parse_constraint
                        Turn a gnomAD constraint response into a table
gnomad_parse_constraints
                        Turn an aliased gnomAD constraint response into
                        a table
gnomad_parse_frequency
                        Turn a gnomAD variant response into a frequency
                        record
gnomad_parse_populations
                        Combine gnomAD per-ancestry counts into one
                        frequency table
gnomad_parse_variant    Turn a gnomAD variant response into a frequency
                        row
gnomad_parse_variants   Turn an aliased gnomAD variant response into a
                        table
gnomad_variant_id       Build a gnomAD variant id from variant
                        components
gtex_gene_reference     Resolve a gene to GTEx's versioned GENCODE id
gtex_median_expression
                        Median expression across tissues
gtex_parse_expression   Turn a GTEx median-expression response into a
                        table
gtex_parse_reference    Turn a GTEx gene-reference response into a
                        table
hpa_gene                The Human Protein Atlas record for a gene
hpa_parse_gene          Turn an HPA gene record into a table
hpo_gene_annotation     HPO's annotation for a gene
hpo_parse_diseases      Turn an HPO gene annotation into a table of
                        diseases
hpo_parse_phenotypes    Turn an HPO gene annotation into a table of
                        phenotypes
hpo_parse_search        Turn an HPO search response into a table
hpo_parse_term          Turn an HPO term response into a table
hpo_search              Search HPO terms by free text
hpo_term                Resolve one HP id to its term
impc_gene_phenotypes    Significant knockout phenotypes IMPC records
                        for a human gene
impc_mouse_ortholog     The mouse ortholog IMPC holds for a human gene
impc_parse_ortholog     Read the mouse ortholog out of an IMPC
                        gene-core response
impc_parse_phenotypes   Turn an IMPC phenotype response into a table
monarch_associations    Associations with an entity on one end
monarch_gene_phenotypes
                        HPO phenotypes Monarch associates with a gene
monarch_hgnc_id         Normalise an HGNC id to the CURIE form Monarch
                        expects
monarch_parse_associations
                        Turn Monarch association records into a table
monarch_parse_search    Turn a Monarch search response into a table
monarch_search          Search Monarch for an entity
mygene_gene             Look up one gene
mygene_genes            Look up many genes in one request
mygene_parse_batch      Turn a MyGene batch response into a gene table
mygene_parse_hits       Turn MyGene hits into a gene table
mygene_pick_hit         Choose the best MyGene hit for a queried token
myvariant_id            Build a MyVariant identifier from variant
                        components
myvariant_parse_batch   Turn a MyVariant batch response into a table
myvariant_parse_record
                        Turn one MyVariant record into a table row
myvariant_variants      Annotate many variants in one request
opentargets_disease_targets
                        Genes associated with a disease
opentargets_drugs       Known drugs and clinical candidates for a gene
opentargets_gene_diseases
                        Diseases associated with a gene
opentargets_is_id       Is a term an ontology id rather than free text
opentargets_parse_diseases
                        Turn target-to-disease rows into a table
opentargets_parse_drugs
                        Turn known-drug rows into a table
opentargets_parse_matches
                        Turn a disease search or lookup into a table
opentargets_parse_pgx   Turn pharmacogenomics rows into a table
opentargets_parse_targets
                        Turn disease-to-target rows into a table
opentargets_pgx         Pharmacogenomics annotations for a gene
opentargets_resolve_disease
                        Resolve a disease term to ontology records
panelapp_all_panels     The whole PanelApp panel index
panelapp_panel          The genes on one PanelApp panel
panelapp_panels         One page of the PanelApp panel index
panelapp_parse_index    Turn a PanelApp panel index page into a table
panelapp_parse_panel    Turn a PanelApp panel detail into a table of
                        genes
pdbe_parse_structures   Turn a PDBe best-structures response into a
                        table
pdbe_structures         Experimental structures for a UniProt accession
pharos_parse_targets    Turn a Pharos targets response into a table
pharos_target           Target Development Level for one gene
pharos_targets          Target Development Level for many genes
protvar_function        Functional context for a residue
protvar_parse_function
                        Turn a ProtVar function response into its text
protvar_parse_population
                        Turn a ProtVar population response into a table
protvar_population      Known variants at a residue
protvar_position        Pull a residue position out of a protein-change
                        string
protvar_strip_citations
                        Strip inline citations out of a UniProt
                        function comment
pubtator_entity         Build the PubTator3 entity token for a gene
pubtator_gene_literature
                        Articles PubTator3 has tagged with a gene
pubtator_parse_count    Read the article count off a PubTator3 search
                        response
pubtator_parse_results
                        Turn PubTator3 search results into a table
quickgo_annotations     GO annotations for a UniProt accession
quickgo_parse_annotations
                        Turn a QuickGO annotation response into a table
reactome_parse_pathways
                        Turn a Reactome pathway array into a table
reactome_pathways       Reactome pathways for a gene symbol
string_map_ids          The STRING identifier map for a set of symbols
string_network          The interaction network within a set of genes
string_parse_ids        Turn a STRING identifier-map response into a
                        table
string_parse_network    Turn a STRING network response into an edge
                        table
string_parse_partners   Turn STRING interaction-partner rows into a
                        table
string_partners         Interaction partners for one gene
string_reconcile_edges
                        Rewrite edge endpoints back into the queried
                        symbol space
uniprot_diseases        Diseases UniProt curates for an accession
uniprot_features        Sequence features for an accession
uniprot_features_at     The features spanning a residue position
uniprot_parse_diseases
                        Turn a UniProtKB entry into a curated-disease
                        table
uniprot_parse_features
                        Turn an EBI Proteins features response into a
                        table
variantvalidator_normalize
                        Validate and normalize one HGVS variant
variantvalidator_parse
                        Turn a VariantValidator response into a table
vep_default_options     The request flags VEP is asked for by default
vep_default_throttle    The default rate limit for VEP requests
vep_key                 Build the variant key VEP results are matched
                        on
vep_parse_batch         Turn a VEP batch response into a table
vep_parse_colocated     Turn the colocated variants of a VEP element
                        into a table row
vep_parse_element       Turn one VEP element into a table row
vep_pick_transcript     Choose which transcript to report for a variant
vep_region              Build a VEP region string from variant
                        components
vep_variants            Consequence predictions for many variants
vep_variants_all        Consequence predictions for any number of
                        variants
