Multiple Testing Methods for Exploratory Research

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Documentation for package ‘cherry’ version 0.6-14

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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adjusted	Adjusted p-values for the number of true hypotheses.
alpha	Class "closure" for storing the result of the closed testing procedure
alpha-method	Class "DAG" for storing the result of the DAG multiple testing method
alpha-method	Class "closure" for storing the result of the closed testing procedure
alpha-method	Class "region" for storing the result of the region procedure
alpha<-	Class "closure" for storing the result of the closed testing procedure
alpha<--method	Class "closure" for storing the result of the closed testing procedure
closed	Closed Testing for Exploratory Research
closure	Class "closure" for storing the result of the closed testing procedure
closure-class	Class "closure" for storing the result of the closed testing procedure
construct	Constructing a DAG.
curveFisher	Confidence limits for the number of true hypotheses, with shortcuts.
curveMeinshausen	Confidence limits for the number of true hypotheses, with shortcuts.
curveSimes	Confidence limits for the number of true hypotheses, with shortcuts.
DAG	Class "DAG" for storing the result of the DAG multiple testing method
DAG-class	Class "DAG" for storing the result of the DAG multiple testing method
DAGmethod	Testing of hypotheses, forming a DAG.
DAGpick	Confidence limits for the number of false hypotheses in a given family of sets.
DAGstructure	Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
DAGstructure-class	Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
defining	Class "closure" for storing the result of the closed testing procedure
defining-method	Class "closure" for storing the result of the closed testing procedure
hommelFast	Calculates adjusted p-values of Hommel's method efficiently.
hypotheses	Class "closure" for storing the result of the closed testing procedure
hypotheses-method	Class "closure" for storing the result of the closed testing procedure
implications	Class "region" for storing the result of the region procedure
implications-method	Class "DAG" for storing the result of the DAG multiple testing method
implications-method	Class "region" for storing the result of the region procedure
istwoway	Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
istwoway-method	Class "DAGstructure" for storing the result of the construct method that constructs the DAG.
NAEP	National Assessment of Educational Progress (NAEP) p-values
pick	Confidence limits for the number of true hypotheses.
pickFisher	Confidence limits for the number of true hypotheses, with shortcuts.
pickMeinshausen	Confidence limits for the number of true hypotheses, with shortcuts.
pickSimes	Confidence limits for the number of true hypotheses, with shortcuts.
pvalue	Class "region" for storing the result of the region procedure
pvalue-method	Class "DAG" for storing the result of the DAG multiple testing method
pvalue-method	Class "region" for storing the result of the region procedure
region	Class "region" for storing the result of the region procedure
region-class	Class "region" for storing the result of the region procedure
regionmethod	Testing of all possible region hypotheses
regionpick	Confidence limits for the number of false hypotheses in a given region.
regionplot	Visualizing of the region hypotheses that could be rejected.
regionplot2	Visualizing of the region hypotheses that could be rejected.
shortlist	Class "closure" for storing the result of the closed testing procedure
shortlist-method	Class "closure" for storing the result of the closed testing procedure
show-method	Class "DAG" for storing the result of the DAG multiple testing method
show-method	Class "closure" for storing the result of the closed testing procedure
show-method	Class "region" for storing the result of the region procedure
structuredHolm	Testing of hypotheses, forming a DAG, by using a variant of Holm's method.
summary-method	Class "DAG" for storing the result of the DAG multiple testing method
summary-method	Class "closure" for storing the result of the closed testing procedure
summary-method	Class "region" for storing the result of the region procedure