RegionData-class        RegionData: one region of a Venn diagram
RegionResult-class      RegionResult: result of analyze()
StatisticsResult-class
                        StatisticsResult: container for pairwise
                        statistical metric tables
SvgImage-class          SvgImage: wrapper for rendered SVG output
VennDataset-class       VennDataset: in-memory representation of a
                        Venn-diagram input
analyze                 Analyze a Venn diagram dataset
augment.RegionResult    Augment method for RegionResult
                        (broom-compatible)
bh_fdr                  Benjamini-Hochberg FDR adjustment
circle_intersection_area
                        Lens-shaped intersection area of two circles
cluster_set_order       Hierarchical clustering on a symmetric distance
                        matrix.
compute_pairwise        Compute all 5 pairwise statistical tables
dice                    Sorensen-Dice coefficient
effective_universe      Effective hypergeometric universe size for a
                        RegionResult
exclusive_items         Items exclusive to a specific set combination
fold_enrichment         Fold enrichment (observed / expected ratio)
generate_proportional_svg
                        Generate an area-proportional SVG for a 2- or
                        3-set RegionResult
geom_venn               Embed a rendered Venn diagram as a ggplot2
                        layer
glance.RegionResult     Glance method for RegionResult
                        (broom-compatible)
hypergeometric_p_value
                        One-sided hypergeometric p-value
                        (over-representation)
intersection_items      Items in the intersection of the named sets
item_share_distribution
                        Item Share Distribution
jaccard                 Jaccard similarity index
list_models             List all bundled Venn diagram models
list_samples            List bundled sample dataset names
load_csv                Load a delimited file (CSV/TSV) into a
                        ['VennDataset-class']
load_gmt                Load a GMT (Gene Matrix Transposed) file into a
                        ['VennDataset-class']
load_gmx                Load a GMX file (transposed GMT) into a
                        ['VennDataset-class']
load_sample             Load a bundled sample dataset by name
load_tsv                Load a tab-separated file into a
                        ['VennDataset-class']
overlap_coefficient     Szymkiewicz-Simpson overlap coefficient
parse_region_expression
                        Parse a Boolean region expression into bitmasks
render_cluster_heatmap
                        Render a cluster-ordered Jaccard similarity
                        heatmap
render_enrichment_bar   Render the pairwise enrichment bar chart
render_enrichment_lollipop
                        Render the pairwise enrichment lollipop chart
render_network          Render a force-directed network plot from a
                        RegionResult
render_share_distribution
                        Render the Item Share Distribution histogram
render_upset            Render an UpSet plot from a RegionResult
render_venn_svg         Render a RegionResult onto its model SVG and
                        return the raw SVG string
solve_2set              Area-proportional 2-set circle layout
solve_3set              Area-proportional 3-set circle layout
                        (Wilkinson 2012-style triangulation)
statistics              Lazy pairwise statistics for a RegionResult
tidy.RegionResult       Tidy method for RegionResult (broom-compatible)
to_excel_workbook       Write a 3-sheet Excel workbook matching the
                        webtool's ZIP bundle
to_matrix_tsv           Write the Item Matrix TSV
to_pdf_report           Compose a multi-page PDF report from a
                        RegionResult
to_region_summary_tsv   Write the Region Summary TSV
to_statistics_tsv       Write the pairwise Statistics TSV
to_zip_report           Write a Full Report ZIP bundle
union_items             Items in the union of the named sets
vdl_version             Get the vennDiagramLab package version
