Package: APackOfTheClones
Type: Package
Title: Visualization of Clonal Expansion for Single Cell Immune
        Profiles
Version: 1.0.0
Authors@R: c(person("Qile", "Yang", email = "qile.yang@berkeley.edu", role = c("cre","aut","cph")))
Maintainer: Qile Yang <qile.yang@berkeley.edu>
Description: Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
BugReports: https://github.com/Qile0317/APackOfTheClones/issues/
Depends: R (>= 4.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: false
Suggests: cowplot, covr, knitr, rmarkdown, sf, spelling, testthat (>=
        3.0.0), vdiffr
Config/testthat/edition: 3
Imports: data.table, dplyr, ggforce, ggplot2, grDevices, hash,
        lifecycle, methods, Rcpp, rlang, Seurat
RoxygenNote: 7.2.3
URL: https://qile0317.github.io/APackOfTheClones/
LinkingTo: Rcpp
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2024-01-10 16:25:25 UTC; qile
Author: Qile Yang [cre, aut, cph]
Repository: CRAN
Date/Publication: 2024-01-13 13:20:09 UTC
Built: R 4.3.0; x86_64-apple-darwin20; 2024-01-13 15:05:05 UTC; unix
Archs: APackOfTheClones.so.dSYM
