Generate Code Lists for the OMOP Common Data Model
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Documentation for package ‘CodelistGenerator’ version 1.7.0
Help Pages
| codesFromCohort | Get concept ids from a provided path to cohort json files |
| codesFromConceptSet | Get concept ids from a provided path to json files |
| compareCodelists | Compare two codelists |
| getATCCodes | Get descendant codes for ATC levels |
| getCandidateCodes | Generate candidate codelist for the OMOP CDM |
| getConceptClassId | getConceptClassId |
| getDescendants | getDescendants |
| getDomains | getDomains |
| getDoseForm | getDoseForm |
| getDrugIngredientCodes | Get descendant codes for drug ingredients |
| getICD10StandardCodes | Get corresponding standard codes for ICD-10 chapters and sub-chapters |
| getMappings | Show mappings from non-standard vocabularies to standard |
| getVocabularies | getVocabularies |
| getVocabVersion | getVocabVersion |
| mockVocabRef | Generate example vocabulary database |
| summariseCodeUse | Summarise code use in patient-level data |