# Reconstruct Animal Paths from Solar Geolocation Loggers Data

## Documentation for package ‘FLightR’ version 0.5.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BAStag2TAGS | Function to write down twilights annotated in BAStag package data in so-called TAGS format
find.stationary.location | find unknown calibration location
find.times.distribution | extracts times of arrival and departure to/from spatial extent
FLightR2Movebank | Summary of estimated locations for Movebank
GeoLight2TAGS | Function to write down twilights annotated in GeoLight package data in so-called TAGS format
get.tags.data | read TAGS formatted data
get_ZI_distances | Estimate distances moved between twilights
make.calibration | Creates a calibration object, further used for calculation of coordinates in the 'run.particle.filter'.
make.grid | makes spatial grid
make.prerun.object | combines data, calibration and sets up priors
map.FLightR.ggmap | plots result over map
plot_likelihood | plot likelihood surface over map
plot_lon_lat | plots result by longitude and latitude
plot_slopes_by_location | plots log of observed versus expected slope by time for a known location
plot_util_distr | plots resulting track over map with uncertainty shown by space utilisation distribution
run.particle.filter | Run Particle Filter
stationary.migration.summary | find potential stationary periods and estimates their location and movement schedule
twGeos2TAGS | Function to write down twilights annotated in twGeos package data in so-called TAGS format