Detecting Signatures of Local Adaptation Based on Ancestry Trajectories

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Documentation for package ‘GenomeAdapt’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AdmixProp	Estimate ancestral proportions from the eigen vectors
GenomeAdapt	Detecting signatures of local adaptation based on multidimensional ancestry genetic map
GenomeAdapt.bed	Detecting signatures of local adaptation based on multidimensional ancestry genetic map
GenomeAdapt.gds	Detecting signatures of local adaptation based on multidimensional ancestry genetic map
GenomeAdapt.vcf	Detecting signatures of local adaptation based on multidimensional ancestry genetic map
PlotAdmix	Plot Ancestry Admixture
plotmanhattan	Making manhattan plot
zscores_qvals	Calculating (q)p-values from multiple factors/scores