# An R Interface to the JBrowse 2 Genome Browser

## Documentation for package ‘JBrowseR’ version 0.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

assembly | Create an assembly for a custom JBrowse view
default_session | Create a default session for a custom JBrowse view
JBrowseR | R interface to JBrowse 2 genome browser
JBrowseR-shiny | Shiny bindings for JBrowseR
JBrowseROutput | Shiny bindings for JBrowseR
JBrowseR_html | Shiny bindings for JBrowseR
json_config | Read in a JBrowse 2 JSON configuration file
renderJBrowseR | Shiny bindings for JBrowseR
serve_data | Serve a local data directory for use with a browser
text_index | Create configuration for a JBrowse 2 text index
theme | Create a theme for a custom JBrowse 2 view
tracks | Create a set of tracks for a custom JBrowse 2 view
track_alignments | Create an AlignmentsTrack for a custom JBrowse 2 view
track_data_frame | Create a track from an R data frame for a custom JBrowse 2 view
track_feature | Create a FeatureTrack for a custom JBrowse 2 view
track_variant | Create a VariantTrack for a custom JBrowse 2 view
track_wiggle | Create a WiggleTrack for a custom JBrowse 2 view