'MicroRNA' Set Enrichment Analysis

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Documentation for package ‘MiRSEA’ version 1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

MiRSEA-package	MicroRNA Set Enrichment Analysis
Corrp2miRfile	create a pathway-microRNA(miRNA) profile and a p value matrix
EnrichmentScore	Computes the enrichment score
EnrichmentScore2	Computes the enrichment score faster
envData	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
example.cls	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
example.gct	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
GetExampleData	Get the example data
GetMiRTargetData	Get the data of microRNA(miRNA) and target genes
GetPathwayData	Get the gene sets of pathways
HeatMapPlot	Plot a heatmap
mfile	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
miRList	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
MiRSEA	MicroRNA Set Enrichment Analysis
MirSEA	Identify dysregulated pathways based on microRNA (miRNA) set enrichment analysis
MsReport	Produce report for a microRNA (abbreviated miRNA) set
p	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
p2miR	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
pathway	The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
PlotCorrelation	Plot global microRNA(miRNA) correlation profile
PlotHeatMap	Plot a heat map
PlotRunEnrichment	Plot running microRNAs(miRNAs) enrichment score
S2N	calculate signal to noise ratio for microRNAs(miRNAs)