# Post Processing of (Half-)Hourly Eddy-Covariance Measurements

## Documentation for package ‘REddyProc’ version 1.3.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

B D E F G L N P R S U misc

REddyProc-package | Post Processing of (Half-)Hourly Eddy-Covariance Measurements

## -- B --

BerkeleyJulianDateToPOSIXct | BerkeleyJulianDateToPOSIXct

## -- D --

DEGebExample | Eddy covariance data from Gebesee crop site, Germany

## -- E --

estimate_vpd_from_dew | Estimate VPD from assuming dewpoint at daily minimum temperature
Example_DETha98 | Eddy covariance data from Tharandt, Germany
extract_FN15 | extract processing results with columns corresponding to Fluxnet15 release

## -- F --

fCalcAVPfromVMFandPress | fCalcAVPfromVMFandPress
fCalcETfromLE | fCalcETfromLE
fCalcExtRadiation | fCalcExtRadiation
fCalcPotRadiation | fCalcPotRadiation
fCalcRHfromAVPandTair | fCalcRHfromAVPandTair
fCalcSVPfromTair | fCalcSVPfromTair
fCalcVPDfromRHandTair | fCalcVPDfromRHandTair
fCheckHHTimeSeries | fCheckHHTimeSeries
fConvertCtoK | fConvertCtoK
fConvertGlobalToVisible | fConvertGlobalToVisible
fConvertKtoC | fConvertKtoC
fConvertTimeToPosix | fConvertTimeToPosix
fConvertVisibleWm2toPhotons | fConvertVisibleWm2toPhotons
filterLongRuns | filterLongRuns
filterLongRunsInVector | filterLongRunsInVector
fLloydTaylor | Temperature dependence of soil respiration
fLoadAmeriflux22 | Read basic variables from Ameriflux standard (as of 2022) files
fLoadEuroFlux16 | fLoadEuroFlux16
fLoadFluxnet15 | Read a file in the format of Fluxnet 2015 release
fLoadTXTIntoDataframe | Load text file with one header and one unit row into data frame
fWriteDataframeToFile | fWriteDataframeToFile

## -- G --

getAmerifluxToBGC05VariableNameMapping | getAmerifluxToBGC05VariableNameMapping
getBGC05ToAmerifluxVariableNameMapping | getBGC05ToAmerifluxVariableNameMapping
getExamplePath | getExamplePath
getFilledExampleDETha98Data | getFilledExampleDETha98Data
getREddyProcExampleDir | getREddyProcExampleDir
getTZone | getTZone
get_timestep_hours | Get the timestep in fractional hours

## -- L --

LightResponseCurveFitter | LightResponseCurveFitter
LightResponseCurveFitter-class | Class '"LightResponseCurveFitter"'
LightResponseCurveFitter_computeCost | LightResponseCurveFitter computeCost
LightResponseCurveFitter_computeLRCGradient | LightResponseCurveFitter computeLRCGradient
LightResponseCurveFitter_fitLRC | LightResponseCurveFitter fitLRC
LightResponseCurveFitter_getOptimizedParameterPositions | LightResponseCurveFitter getOptimizedParameterPositions
LightResponseCurveFitter_getParameterInitials | LightResponseCurveFitter getParameterInitials
LightResponseCurveFitter_getParameterNames | LightResponseCurveFitter getParameterNames
LightResponseCurveFitter_getPriorLocation | LightResponseCurveFitter getPriorLocation
LightResponseCurveFitter_getPriorScale | LightResponseCurveFitter getPriorScale
LightResponseCurveFitter_isParameterInBounds | LightResponseCurveFitter isParameterInBounds
LightResponseCurveFitter_optimLRC | LightResponseCurveFitter optimLRC
LightResponseCurveFitter_optimLRCBounds | LightResponseCurveFitter optimLRCBounds
LightResponseCurveFitter_optimLRCOnAdjustedPrior | LightResponseCurveFitter optimLRCOnAdjustedPrior
LightResponseCurveFitter_predictGPP | LightResponseCurveFitter predictGPP
LightResponseCurveFitter_predictLRC | LightResponseCurveFitter predictLRC
LogisticSigmoidLRCFitter | LogisticSigmoidLRCFitter
LogisticSigmoidLRCFitter-class | Class '"LogisticSigmoidLRCFitter"'
LogisticSigmoidLRCFitter_predictGPP | LogisticSigmoidLRCFitter predictGPP

## -- N --

NonrectangularLRCFitter | NonrectangularLRCFitter
NonrectangularLRCFitter-class | Class '"NonrectangularLRCFitter"'
NonrectangularLRCFitter_getParameterNames | NonrectangularLRCFitter getParameterNames
NonrectangularLRCFitter_predictGPP | NonrectangularLRCFitter predictGPP

## -- P --

partGLControl | partGLControl
partGLControlLasslopCompatible | partGLControlLasslopCompatible
partGLExtractStandardData | partGLExtractStandardData
partitionNEEGL | partitionNEEGL
POSIXctToBerkeleyJulianDate | POSIXctToBerkeleyJulianDate

## -- R --

read_from_ameriflux22 | Extract basic variables from Ameriflux standard (as of 2022) data.frames
read_from_fluxnet15 | extract REddyProc input columns from data.frame in Fluxnet15 format
RectangularLRCFitter | RectangularLRCFitter
RectangularLRCFitter-class | Class '"RectangularLRCFitter"'
RectangularLRCFitterCVersion | RectangularLRCFitterCVersion
RectangularLRCFitterCVersion-class | Class '"RectangularLRCFitterCVersion"'
RectangularLRCFitter_predictGPP | RectangularLRCFitter predictGPP
REddyProc | Post Processing of (Half-)Hourly Eddy-Covariance Measurements
REddyProc_defaultunits | Get the default units for given variables
renameVariablesInDataframe | renameVariablesInDataframe
RHLightResponseCostC | RHLightResponseCostC

## -- S --

sDATA | globalDummyVars
sEddyProc | sEddyProc
sEddyProc-class | Class '"sEddyProc"'
sEddyProc_initialize | sEddyProc initialize
sEddyProc_sApplyUStarScen | sEddyProc sApplyUStarScen
sEddyProc_sCalcPotRadiation | sEddyProc sCalcPotRadiation
sEddyProc_sEstimateUstarScenarios | sEddyProc sEstimateUstarScenarios
sEddyProc_sEstUstarThold | sEddyProc$sEstUstarThreshold - Estimating ustar threshold
sEddyProc_sEstUstarThreshold | sEddyProc$sEstUstarThreshold - Estimating ustar threshold
sEddyProc_sEstUstarThresholdDistribution | sEddyProc sEstUstarThresholdDistribution
sEddyProc_sExportData | sEddyProc sExportData
sEddyProc_sExportResults | sEddyProc sExportResults
sEddyProc_sFillInit | sEddyProc$sFillInit - Initialize gap filling
sEddyProc_sFillLUT | sEddyProc sFillLUT
sEddyProc_sFillMDC | sEddyProc sFillMDC
sEddyProc_sFillVPDFromDew | Estimate VPD from daily minimum temperature
sEddyProc_sGetData | sEddyProc sGetData
sEddyProc_sGetEstimatedUstarThresholdDistribution | sEddyProc sGetEstimatedUstarThresholdDistribution
sEddyProc_sGetUstarScenarios | sEddyProc sGetUstarScenarios
sEddyProc_sGetUstarSuffixes | sEddyProc sGetUstarSuffixes
sEddyProc_sGLFluxPartition | sEddyProc sGLFluxPartition
sEddyProc_sGLFluxPartitionUStarScens | sEddyProc sGLFluxPartitionUStarScens
sEddyProc_sMDSGapFill | sEddyProc sMDSGapFill
sEddyProc_sMDSGapFillAfterUstar | sEddyProc sMDSGapFillAfterUstar
sEddyProc_sMDSGapFillAfterUStarDistr | sEddyProc sMDSGapFillAfterUStarDistr
sEddyProc_sMDSGapFillUStarScens | sEddyProc sMDSGapFillUStarScens
sEddyProc_sMRFluxPartition | sEddyProc sMRFluxPartition
sEddyProc_sMRFluxPartitionUStarScens | sEddyProc sMRFluxPartitionUStarScens
sEddyProc_sPlotDailySums | sEddyProc$sPlotDailySums - Image with daily sums of each year
sEddyProc_sPlotDailySumsY | sEddyProc$sPlotDailySumsY - Plot daily sum of specified year
sEddyProc_sPlotDiurnalCycle | sEddyProc sPlotDiurnalCycle
sEddyProc_sPlotFingerprint | sEddyProc sPlotFingerprint
sEddyProc_sPlotFingerprintY | sEddyProc sPlotFingerprintY
sEddyProc_sPlotHHFluxes | sEddyProc sPlotHHFluxes
sEddyProc_sPlotHHFluxesY | sEddyProc sPlotHHFluxesY
sEddyProc_sPlotNEEVersusUStarForSeason | sEddyProc sPlotNEEVersusUStarForSeason
sEddyProc_sSetLocationInfo | sEddyProc sSetLocationInfo
sEddyProc_sSetUstarScenarios | sEddyProc sSetUstarScenarios
sEddyProc_sSetUStarSeasons | sEddyProc sSetUStarSeasons
sEddyProc_sTKFluxPartition | sEddyProc sTKFluxPartition
sEddyProc_sTKFluxPartitionUStarScens | sEddyProc sTKFluxPartitionUStarScens
sEddyProc_update_ustarthreshold_columns | Add columns reporting the uStar threshold for each scenario to sDATA
sEddyProc_useAnnualUStarThresholds | sEddyProc useAnnualUStarThresholds
sEddyProc_useSeaonsalUStarThresholds | sEddyProc useSeaonsalUStarThresholds
sID | globalDummyVars
sINFO | globalDummyVars
sLOCATION | globalDummyVars
sPlotFingerprint | sEddyProc sPlotFingerprint
sTEMP | globalDummyVars
sUSTAR | globalDummyVars

## -- U --

usControlUstarEst | usControlUstarEst
usControlUstarSubsetting | usControlUstarSubsetting
usCreateSeasonFactorMonth | usCreateSeasonFactorMonth
usCreateSeasonFactorMonthWithinYear | usCreateSeasonFactorMonthWithinYear
usCreateSeasonFactorYday | usCreateSeasonFactorYday
usCreateSeasonFactorYdayYear | usCreateSeasonFactorYdayYear
usEstUstarThreshold | usEstUstarThreshold - Estimating ustar threshold
usEstUstarThresholdSingleFw1Binned | usEstUstarThresholdSingleFw1Binned
usEstUstarThresholdSingleFw2Binned | usEstUstarThresholdSingleFw2Binned
usGetAnnualSeasonUStarMap | usGetAnnualSeasonUStarMap
usGetSeasonalSeasonUStarMap | usGetSeasonalSeasonUStarMap
usGetYearOfSeason | usGetYearOfSeason

## -- misc --

_REddyProc_RHLightResponseCostC | RHLightResponseCostC