Reverse-Phase Protein Array Super Position and Concentration
Evaluation
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Documentation for package ‘RPPASPACE’ version 1.0.9
Help Pages
| RPPASPACE-package | Reverse phase protein lysate array analysis |
-- C --
| CobsFitClass-class | Class "CobsFitClass" |
| coef-method | Class "RPPAFit" |
| coef-method | Class "FitClass" |
| coef-method | Class "LogisticFitClass" |
| coefficients-method | Class "RPPAFit" |
| coefficients-method | Class "FitClass" |
| coefficients-method | Class "LogisticFitClass" |
| coerce-method | Class "Directory" |
-- D --
| dim-method | Class "RPPA" |
| Directory | Class "Directory" |
| Directory-class | Class "Directory" |
| DS5RPPAPreFitQC-class | Class "DS5RPPAPreFitQC" |
-- F --
| FitClass-class | Class "FitClass" |
| fitCurveAndSummarizeFromSettings | Class "RPPASPACESettings" |
| fitSeries-method | Class "FitClass" |
| fitSeries-method | Class "LogisticFitClass" |
| fitSeries-method | Class "CobsFitClass" |
| fitSeries-method | Class "LoessFitClass" |
| fitSlide-method | Class "FitClass" |
| fitSlide-method | Class "LogisticFitClass" |
| fitSlide-method | Class "CobsFitClass" |
| fitSlide-method | Class "LoessFitClass" |
| fitted-method | Class "RPPAFit" |
| fitted-method | Class "FitClass" |
| fitted-method | Class "LogisticFitClass" |
| fitted-method | Class "CobsFitClass" |
| fitted-method | Class "LoessFitClass" |
-- G --
| getConfidenceInterval | Compute Confidence Intervals for a Model Fit to Dilution Series |
| getRegisteredModel | Model Registration Methods |
| getRegisteredModelKeys | Model Registration Methods |
| getRegisteredModelLabel | Model Registration Methods |
| getRegisteredNormalizationMethod | Normalization Method Registration Methods |
| getRegisteredNormalizationMethodKeys | Normalization Method Registration Methods |
| getRegisteredNormalizationMethodLabel | Normalization Method Registration Methods |
-- H --
| hist-method | Class "RPPAFit" |
-- I --
| image-method | Class "RPPA" |
| image-method | Class "RPPAFit" |
| is.Directory | Class "Directory" |
| is.FitClass | Class "FitClass" |
| is.RPPA | Class "RPPA" |
| is.RPPADesignParams | Class "RPPADesignParams" |
| is.RPPAFit | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| is.RPPAFitParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| is.RPPANormalizationParams | Class "RPPANormalizationParams" |
| is.RPPAPreFitQC | Class "RPPAPreFitQC" |
| is.RPPASet | Class "RPPASet" |
| is.RPPASetSummary | Class "RPPASetSummary" |
| is.RPPASPACESettings | Class "RPPASPACESettings" |
| is.RPPASpatialParams | Class "RPPASpatialParams" |
-- L --
| LoessFitClass-class | Class "LoessFitClass" |
| LogisticFitClass-class | Class "LogisticFitClass" |
-- N --
| normalize | Method "normalize" |
| normalize-method | Class "RPPASet" |
| normalize-method | Normalization |
| normalize-method | Method "normalize" |
-- P --
| paramString-method | Class "RPPADesignParams" |
| paramString-method | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| paramString-method | Class "RPPANormalizationParams" |
| paramString-method | Class "RPPASpatialParams" |
| paramString-method | Class "RPPASPACESettings" |
| plot-method | Class "RPPA" |
| plot-method | Class "RPPADesignParams" |
| plot-method | Class "RPPAFit" |
-- Q --
| qcprob | Method "qcprob" |
| qcprob-method | Class "RPPAPreFitQC" |
| qcprob-method | Class "DS5RPPAPreFitQC" |
| qcprob-method | Method "qcprob" |
-- R --
| registerModel | Model Registration Methods |
| registerNormalizationMethod | Normalization Method Registration Methods |
| resid-method | Class "RPPAFit" |
| residuals-method | Class "RPPAFit" |
| RPPA | Class "RPPA" |
| RPPA-class | Class "RPPA" |
| RPPADesignParams | Class "RPPADesignParams" |
| RPPADesignParams-class | Class "RPPADesignParams" |
| RPPAFit | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| RPPAFit-class | Class "RPPAFit" |
| RPPAFitFromParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| RPPAFitParams | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| RPPAFitParams-class | Fitting Dilution Curves to Protein Lysate Arrays with Class "RPPAFitParams" |
| RPPANormalizationParams | Class "RPPANormalizationParams" |
| RPPANormalizationParams-class | Class "RPPANormalizationParams" |
| RPPAPreFitQC | Class "RPPAPreFitQC" |
| RPPAPreFitQC-class | Class "RPPAPreFitQC" |
| RPPASet | Class "RPPASet" |
| RPPASet-class | Class "RPPASet" |
| RPPASetSummary | Class "RPPASetSummary" |
| RPPASetSummary-class | Class "RPPASetSummary" |
| RPPASPACESettings | Class "RPPASPACESettings" |
| RPPASPACESettings-class | Class "RPPASPACESettings" |
| RPPASpatialParams | Class "RPPASpatialParams" |
| RPPASpatialParams-class | Class "RPPASpatialParams" |
-- S --
| seriesNames | Class "RPPA" |
| seriesToUseToMakeCurve | Class "RPPA" |
| spatialAdjustment | Spatial Correction |
| spatialAdjustmentFromParams | Spatial Correction |
| spatialCorrection | Spatial Correction |
| summary-method | Class "RPPA" |
| summary-method | Class "RPPAFit" |
| summary-method | Class "RPPASet" |
| summary-method | Class "RPPAPreFitQC" |
| summary-method | Class "DS5RPPAPreFitQC" |
-- T --
| trimConc-method | Class "FitClass" |
| trimConc-method | Class "LogisticFitClass" |
| trimConc-method | Class "CobsFitClass" |
| trimConc-method | Class "LoessFitClass" |
-- W --
| write.summary | Method "write.summary" |
| write.summary-method | Class "RPPASet" |
| write.summary-method | Class "RPPASetSummary" |
| write.summary-method | Class "RPPASPACESettings" |
| write.summary-method | Method "write.summary" |