Racmacs-package	Racmacs-package
acmap	acmap
acmapAttributes	acmapAttributes
addOptimization	addOptimization
adjustedLogTiterTable	adjustedLogTiterTable
adjustedTiterTable	adjustedTiterTable
agAnnotations	ptAnnotations
agAnnotations<-	ptAnnotations
agAspect	ptStyles
agAspect<-	ptStyles
agAttributes	agAttributes
agBaseCoords	ptBaseCoords
agBaseCoords<-	ptBaseCoords
agBootstrapBlob	ptBootstrapBlob
agBootstrapBlobs	ptBootstrapBlob
agBootstrapCoords	ptBootstrapCoords
agClades	ptClades
agClades<-	ptClades
agCohesion	mapCohesion
agContinent	agAttributes
agContinent<-	agAttributes
agCoords	ptCoords
agCoords<-	ptCoords
agDates	agAttributes
agDates<-	agAttributes
agExtra	agAttributes
agExtra<-	agAttributes
agFill	ptStyles
agFill<-	ptStyles
agGroups	agGroups
agGroups<-	agGroups
agHomologousSr	agHomologousSr
agIDs	agAttributes
agIDs<-	agAttributes
agLabIDs	agLabIDs
agLabIDs<-	agLabIDs
agLeverage	ptLeverage
agLineage	agAttributes
agLineage<-	agAttributes
agNames	agAttributes
agNames<-	agAttributes
agNucleotideSequences	agSequences
agNucleotideSequences<-	agSequences
agOpacity<-	ptOpacity
agOutline	ptStyles
agOutline<-	ptStyles
agOutlineWidth	ptStyles
agOutlineWidth<-	ptStyles
agPassage	agAttributes
agPassage<-	agAttributes
agReactivityAdjustments	agReactivityAdjustments
agReactivityAdjustments<-	agReactivityAdjustments
agReassortant	agAttributes
agReassortant<-	agAttributes
agReference	agAttributes
agReference<-	agAttributes
agRotation	ptStyles
agRotation<-	ptStyles
agSequences	agSequences
agSequences<-	agSequences
agShape	ptStyles
agShape<-	ptStyles
agShown	ptStyles
agShown<-	ptStyles
agSize	ptStyles
agSize<-	ptStyles
agStress	pointStress
agStressPerTiter	pointStress
agStrings	agAttributes
agStrings<-	agAttributes
agTriangulationBlob	ptTriangulationBlob
agTriangulationBlobs	ptTriangulationBlob
allMapDimensions	optimizationProperties
allMapStresses	optimizationProperties
applyMapTransform	applyMapTransform
applyPlotspec	applyPlotspec
as.json	as.json
blob	blob
blobsize	blobsize
bootstrapBlobs	bootstrapBlobs
bootstrapMap	bootstrapMap
checkHemisphering	checkHemisphering
colBases	colBases
deprecated_functions	deprecated_functions
dilutionStepsize	dilutionStepsize
dilutionStepsize<-	dilutionStepsize
dimensionTestMap	dimensionTestMap
edit_agNames	edit_agNames
edit_srNames	edit_srNames
export_viewer	export_viewer
fixedColBases	colBases
fixedColBases<-	colBases
getOptimization	getOptimization
ggplot.acmap	ggplot.acmap
htmlAdjustedTiterTable	htmlAdjustedTiterTable
htmlMergeReport	htmlMergeReport
htmlTiterTable	htmlTiterTable
keepBestOptimization	keepBestOptimization
keepOptimizations	keepOptimizations
keepSingleOptimization	keepSingleOptimization
layerNames	layerNames
layerNames<-	layerNames
listOptimizations	listOptimizations
logtiterTable	logtiterTable
logtiterTableLayers	logtiterTableLayers
make.acmap	make.acmap
map-table-distances	map-table-distances
mapBootstrapCoords	mapBootstrapCoords
mapBootstrap_agCoords	mapBootstrapCoords
mapBootstrap_ptBaseCoords	mapBootstrapCoords
mapBootstrap_srCoords	mapBootstrapCoords
mapCohesion	mapCohesion
mapComment	mapComment
mapComment<-	mapComment
mapDescription	mapDescription
mapDescription<-	mapDescription
mapDimensions	mapDimensions
mapDistances	mapDistances
mapGadget	mapGadget
mapName	mapName
mapName<-	mapName
mapRelaxed	mapRelaxed
mapResiduals	mapResiduals
mapStress	mapStress
mapTransformation	mapTransformation
mapTransformation<-	mapTransformation
mapTranslation	mapTransformation
mapTranslation<-	mapTransformation
matchStrains	matchStrains
match_mapAntigens	matchStrains
match_mapSera	matchStrains
mergeMaps	mergeMaps
mergeReport	mergeReport
minColBasis	colBases
minColBasis<-	colBases
moveTrappedPoints	moveTrappedPoints
numAntigens	acmapAttributes
numLayers	acmapAttributes
numOptimizations	acmapAttributes
numPoints	acmapAttributes
numSera	acmapAttributes
numSeraGroups	acmapAttributes
optimizationProperties	optimizationProperties
optimizeAgReactivity	optimizeAgReactivity
optimizeMap	optimizeMap
orderAntigens	orderPoints
orderPoints	orderPoints
orderSera	orderPoints
plot.acmap	plot.acmap
plotly_map_table_distance	map-table-distances
plot_map_table_distance	map-table-distances
pointStress	pointStress
procrustesData	procrustesData
procrustesMap	procrustesMap
ptAnnotations	ptAnnotations
ptBaseCoords	ptBaseCoords
ptBootstrapBlob	ptBootstrapBlob
ptBootstrapBlobs	ptBootstrapBlob
ptBootstrapCoords	ptBootstrapCoords
ptClades	ptClades
ptCoords	ptCoords
ptCoords<-	ptCoords
ptDrawingOrder	ptDrawingOrder
ptDrawingOrder<-	ptDrawingOrder
ptLeverage	ptLeverage
ptOpacity	ptOpacity
ptStyles	ptStyles
ptTriangulationBlob	ptTriangulationBlob
ptTriangulationBlobs	ptTriangulationBlob
Racmacs	Racmacs-package
RacMerge.options	RacMerge.options
RacOptimizer.options	RacOptimizer.options
RacViewer	RacViewer
RacViewer-shiny	RacViewer-shiny
RacViewer.options	RacViewer.options
RacViewerOutput	RacViewer-shiny
randomizeCoords	randomizeCoords
read.acmap	read.acmap
read.titerTable	read.titerTable
realignMap	realignMap
realignOptimizations	realignOptimizations
recalculateStress	recalculateStress
reflectMap	reflectMap
relaxMap	relaxMap
relaxMapOneStep	relaxMapOneStep
removeAntigens	removePoints
removeOptimizations	removeOptimizations
removePoints	removePoints
removeSera	removePoints
renderRacViewer	RacViewer-shiny
rotateMap	rotateMap
runGUI	runGUI
save.acmap	save.acmap
save.coords	save.coords
save.titerTable	save.titerTable
setLegend	setLegend
sortOptimizations	sortOptimizations
splitTiterLayers	splitTiterLayers
srAnnotations	ptAnnotations
srAnnotations<-	ptAnnotations
srAspect	ptStyles
srAspect<-	ptStyles
srAttributes	srAttributes
srBaseCoords	ptBaseCoords
srBaseCoords<-	ptBaseCoords
srBootstrapBlob	ptBootstrapBlob
srBootstrapBlobs	ptBootstrapBlob
srBootstrapCoords	ptBootstrapCoords
srClades	ptClades
srClades<-	ptClades
srCohesion	mapCohesion
srCoords	ptCoords
srCoords<-	ptCoords
srDates	srAttributes
srDates<-	srAttributes
srExtra	srAttributes
srExtra<-	srAttributes
srFill	ptStyles
srFill<-	ptStyles
srGroups	srGroups
srGroups<-	srGroups
srHomologousAgs	srHomologousAgs
srHomologousAgs<-	srHomologousAgs
srIDs	srAttributes
srIDs<-	srAttributes
srLeverage	ptLeverage
srLineage	srAttributes
srLineage<-	srAttributes
srNames	srAttributes
srNames<-	srAttributes
srNucleotideSequences	srSequences
srNucleotideSequences<-	srSequences
srOpacity<-	ptOpacity
srOutline	ptStyles
srOutline<-	ptStyles
srOutlineWidth	ptStyles
srOutlineWidth<-	ptStyles
srPassage	srAttributes
srPassage<-	srAttributes
srReassortant	srAttributes
srReassortant<-	srAttributes
srReference	srAttributes
srReference<-	srAttributes
srRotation	ptStyles
srRotation<-	ptStyles
srSequences	srSequences
srSequences<-	srSequences
srShape	ptStyles
srShape<-	ptStyles
srShown	ptStyles
srShown<-	ptStyles
srSize	ptStyles
srSize<-	ptStyles
srSpecies	srAttributes
srSpecies<-	srAttributes
srStress	pointStress
srStressPerTiter	pointStress
srStrings	srAttributes
srStrings<-	srAttributes
srTriangulationBlob	ptTriangulationBlob
srTriangulationBlobs	ptTriangulationBlob
standardizeStrainNames	standardizeStrainNames
stressBlobs	deprecated_functions
stressTable	stressTable
subsetCommonAgs	subsetCommonPoints
subsetCommonPoints	subsetCommonPoints
subsetCommonSrGroups	subsetCommonPoints
subsetMap	subsetMap
tableColbases	tableColbases
tableDistances	tableDistances
titerLeverage	ptLeverage
titerTable	titerTable
titerTable<-	titerTable
titerTableFlat	titerTable
titerTableFlat<-	titerTable
titerTableLayers	titerTableLayers
titerTableLayers<-	titerTableLayers
translateMap	translateMap
triangulationBlobs	triangulationBlobs
unstableMaps	unstableMaps
update_ferret_seraNames	update_ferret_seraNames
view	view
view.acmap	view.acmap
view.default	view.default
