SUMMER-package |
SUMMER package documentation. |
aggregateSurvey |
Aggregate estimators from different surveys. |
BRFSS |
The BRFSS dataset |
ChangeRegion |
Map region names to a common set. |
DemoData |
Simulated child mortality person-month dataset. |
DemoData2 |
Simulated dataset for prevalence mapping. |
DemoMap |
Uganda Admin-1 region map for illustration purpose |
DemoMap2 |
Kenya Admin-1 region map for illustration purpose |
expit |
Expit transformation |
fitGeneric |
Fit space-time smoothing models for a generic outcome from complex surveys. |
fitINLA |
Smoothed direct estimates for mortality rates |
fitINLA2 |
Cluster-level space-time smoothing models for mortality rates |
getAdjusted |
Adjust direct estimates and their associated variances |
getAmat |
Extract adjacency matrix from the map |
getBirths |
Reformat full birth records into person-month format |
getCounts |
Aggregate person-month data into counts and totals by groups. |
getDiag |
Extract posterior summaries of random effects |
getDirect |
Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey. |
getDirectList |
Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys. |
getSmoothed |
Extract smoothed estimates. |
getSmoothedDensity |
Calculate and plot posterior densities of the projected estimates |
hatchPlot |
Plot maps with uncertainty hatching. |
iid.new |
New random IID models for m-year to period random effects |
iid.new.pc |
New random IID models for m-year to period random effects |
KenData |
Auxiliary data for Kenya 2014 DHS. |
KingCounty |
Map of King County |
logit |
Logit transformation |
MalawiData |
Auxiliary data for Malawi 2000, 2004, 2010, and 2015 DHS. |
MalawiMap |
Malawi Admin-2 map |
mapPlot |
Plot region-level variables on a map |
mapPoints |
Map GPS points to polygon regions |
plot.SUMMERproj |
Plot projection output. |
print.SUMMERmodel |
Print method for the smoothing models. |
print.SUMMERmodel.svy |
Print method for the smoothing models from 'smoothSurvey'. |
print.SUMMERprojlist |
Print method for the combined projection output. |
ridgePlot |
Calculate and plot posterior densities of the projected estimates |
rst |
Simulate spatial and temporal random effects |
rw.new |
New random walk 1 and 2 models for m-year to period random effects |
rw.new.pc |
New random walk 1 and 2 models for m-year to period random effects |
simhyper |
Simulate hyperpriors from an GMRF |
smoothArea |
Smooth via area level model |
smoothCluster |
Cluster-level space-time smoothing models for mortality rates |
smoothDirect |
Smoothed direct estimates for mortality rates |
smoothSurvey |
Fit space-time smoothing models for a generic outcome from complex surveys. |
smoothUnit |
Smooth via unit level model |
st.new |
New Type I to IV space time interaction models for m-year to period random effects |
st.new.pc |
New Type I to IV space time interaction models for m-year to period random effects |
summary.SUMMERmodel |
Summary method for the smoothing models. |
summary.SUMMERmodel.svy |
Summary method for the smoothing model and output from 'smoothSurvey'. |
SUMMER |
SUMMER package documentation. |
tcpPlot |
Discrete-color maps based on the True Classification Probabilities |