A Graphical Model Approach to Identify Primary Genes in
Perturbed Biological Pathways
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘SourceSet’ version 0.1.5
Help Pages
| easyLookSource | Easy look results |
| getPermutations | Get random permutations of a set of elements |
| infoSource | Get summary statistics on graphs and variables |
| parameters | Estimation of parameters for test equality of two normal distributions |
| ripAllRootsClique | All possible RIP orderings |
| shrinkTEGS | Default shrinkage estimation of covariance matrices |
| simulation | Simulated dataset |
| sourceCytoscape | Visualize in Cytoscape a collection of graphs analyzed with the source set algorithm |
| sourceSankeyDiagram | Create a D3 JavaScript Sankey diagram |
| sourceSet | Source Set |
| sourceUnionCytoscape | Visualize in Cytoscape the graphical union induced by the source sets of a collection of graphs |
| testMeanVariance | Test the equality of two normal distributions |