agg_to_daily | Infer daily counts from aggregates |
cl.input | Sample of aggregated clinical reports |
def_dist_fecal_shedding | Define a family of fecal shedding distributions |
def_dist_generation_interval | Define a family of generation interval distributions |
def_dist_incubation_period | Define a family of incubation period distributions |
def_dist_reporting_delay | Define a family of reporting delay distributions |
def_dist_reporting_fraction | Define a reporting fraction distribution |
estimate_R_cl | Estimate the effective reproduction from clinical report data |
estimate_R_ww | Estimate the effective reproduction from wastewater concentration data. |
get_discrete_dist | Get a discretized, truncated version of a distribution |
plot_diagnostic_cl | Diagnostic plot for R estimation from clinical report data |
plot_diagnostic_ww | Diagnostic plot for R estimation from wastewater data |
plot_dist | Plot a distribution |
ww.input | Sample of wastewater concentration |