Effective Reproduction Number Estimation

[Up] [Top]

Documentation for package ‘ern’ version 1.3.1

Help Pages

agg_to_daily Infer daily counts from aggregates
cl.input Sample of aggregated clinical reports
def_dist_fecal_shedding Define a family of fecal shedding distributions
def_dist_generation_interval Define a family of generation interval distributions
def_dist_incubation_period Define a family of incubation period distributions
def_dist_reporting_delay Define a family of reporting delay distributions
def_dist_reporting_fraction Define a reporting fraction distribution
estimate_R_cl Estimate the effective reproduction from clinical report data
estimate_R_ww Estimate the effective reproduction from wastewater concentration data.
get_discrete_dist Get a discretized, truncated version of a distribution
plot_diagnostic_cl Diagnostic plot for R estimation from clinical report data
plot_diagnostic_ww Diagnostic plot for R estimation from wastewater data
plot_dist Plot a distribution
ww.input Sample of wastewater concentration