Geographic and Taxonomic Occurrence R-Based Scrubbing

Documentation for package ‘gatoRs’ version 1.0.0

basic_locality_clean	Locality Cleaning - Remove missing and improbable coordinates
basis_clean	Basis Cleaning - Removes records with certain record basis
citation_bellow	Cite Data - Get GBIF citations
data_chomp	Subset Data - Get species, longitude, and latitude columns
filter_fix_names	Used in gators_download() - Filter iDigBio results by scientific name
fix_columns	Used in gators_download() - Fill out taxonomic name columns
fix_names	Used in gators_download() - Fix taxonomic name capitalization
full_clean	Full Cleaning - Wrapper function to speed clean
gators_download	Download - Download specimen data from both iDigBio and GBIF
get_gbif	Used in gators_download() - Download data from the Global Biodiversity Information Facility
get_idigbio	Used in gators_download() - Download data from Integrated Digitized Biocollections
needed_records	Identify Missing Information - Find records with redacted or missing data
need_to_georeference	Identify Missing Information - Find records which lack coordinate information
one_point_per_pixel	Spatial Correction - One point per pixel
process_flagged	Locality Cleaning - Find possibly problematic occurrence records
remove_duplicates	Remove Duplicates - Remove records with identical event dates and coordinates
remove_skewed	Used in basic_locality_clean() - Removed skewed locality
taxa_clean	Taxonomic Cleaning - Filter and resolve taxon names
thin_points	Spatial Correction - Spatially thin records