Package: harmony
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Version: 0.1.1
Authors@R: c(
    person("Ilya", "Korsunsky", email = "ilya.korsunsky@gmail.com",
        role = c("cre", "aut"), comment = c(ORCID = "0000-0003-4848-3948")),
    person("Nghia", "Millard", email = "nmillard@g.harvard.edu",
        role = "aut", comment = c(ORCID = "0000-0002-0518-7674")),
    person("Jean", "Fan", email = "jeanfan@fas.harvard.edu",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-0212-5451")),
    person("Kamil", "Slowikowski", email = "kslowikowski@gmail.com",
        role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-2843-6370")),
    person("Miles", "Smith",
        role = c("ctb")),
    person("Soumya", "Raychaudhuri",
        role = c("aut"), comment = c(ORCID = "0000-0002-1901-8265"))
    )
Description: Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.
URL: software.broadinstitute.org/harmony
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.1
Depends: R(>= 3.4.0), Rcpp
LazyData: true
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Imports: dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods,
        tibble, rlang
Suggests: SingleCellExperiment, Seurat (>= 4.1.1), testthat, knitr,
        rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2022-11-12 13:18:25 UTC; ik97
Author: Ilya Korsunsky [cre, aut] (<https://orcid.org/0000-0003-4848-3948>),
  Nghia Millard [aut] (<https://orcid.org/0000-0002-0518-7674>),
  Jean Fan [aut, ctb] (<https://orcid.org/0000-0002-0212-5451>),
  Kamil Slowikowski [aut, ctb] (<https://orcid.org/0000-0002-2843-6370>),
  Miles Smith [ctb],
  Soumya Raychaudhuri [aut] (<https://orcid.org/0000-0002-1901-8265>)
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
Repository: CRAN
Date/Publication: 2022-11-14 09:20:08 UTC
Built: R 4.3.0; x86_64-apple-darwin20; 2023-04-12 21:55:48 UTC; unix
Archs: harmony.so.dSYM
