Inferring Cell-Specific Gene Regulatory Network

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Documentation for package ‘inferCSN’ version 1.0.0

• DESCRIPTION file.

Help Pages

inferCSN-package	inferCSN: Inferring Cell-Specific Gene Regulatory Network
acc.calculate	ACC calculate
auc.calculate	AUC value calculate
check.parameters	Check input parameters
coef.inferCSN	Extracts a specific solution in the regularization path
coef.inferCSNCV	Extracts a specific solution in the regularization path
compute.gene.rank	Compute and rank TFs in network
contrast.networks	contrast.networks
dynamic.networks	Plot of dynamic networks
example_ground_truth	Example ground truth data
example_matrix	Example matrix data
inferCSN	Inferring Cell-Specific Gene Regulatory Network
inferCSN-method	Inferring Cell-Specific Gene Regulatory Network
inferCSN.fit	Fit a sparse regression model
net.format	Format weight table
network.heatmap	The heatmap of network
predict.inferCSN	Predict Response
predict.inferCSNCV	Predict Response
prepare.performance.data	prepare.performance.data
print.inferCSN	Prints a summary of inferCSN.fit
print.inferCSNCV	Prints a summary of inferCSN.fit
sparse.regression	Sparse regression model
sub.inferCSN	Sparse regression model for single gene
table.to.matrix	Switch weight table